New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3437020	44 (1.390)	4 (0.130)	4/238	NT	7.7%	coding (103/879 nt)	PP_3056	tail fiber protein
	?	NC_002947	= 3437045	54 (1.780)					coding (128/879 nt)	PP_3056	tail fiber protein

CCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAA  >  NC_002947/3436882‑3437169                                                                                                                                           |                                                                                                                                                      ccGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGt                                                                                                                                            >  1:440143/1‑150 (MQ=255)                gggTACGATGGAGGCTGCTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAAc                                                                                                                             >  1:93680‑M2/1‑149 (MQ=255)                  gTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAAcga                                                                                                                           >  2:572231‑M2/1‑147 (MQ=255)                       aTGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCaaa                                                                                                                      >  1:350519/1‑150 (MQ=255)                           aGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTTGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAg                                                                                                                  >  2:187378/1‑150 (MQ=255)                           aGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGttggtcggggtgtaacccgacgtaccgagcgcgat                                                                                                                    >  1:786452‑M1/1‑113 (MQ=255)                           aGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGttggtcggggtgtaacccgacgtaccgagcgcgat                                                                                                                    <  2:786452‑M1/148‑36 (MQ=255)                             gCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCt                                                                                                                >  2:787662/1‑150 (MQ=255)                                   ttATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGttggtcggggtgtaacccgacgtaccgagcgc                                                                                                                       >  2:775567‑M1/1‑105 (MQ=255)                                   ttATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGttggtcggggtgtaacccgacgtaccgagcgc                                                                                                                       <  1:775567‑M1/137‑33 (MQ=255)                                     aTGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGcc                                                                                                        >  2:1299/1‑150 (MQ=255)                                             tccTTGACAACCTGTGATCACCAAGAAAGGCCTGAATGGAGTCTGGAATGCCAACAGTACAGAGCTTTCTGCCGAGATCACCCACATCGCGCTCGATAAGTCAGTGTACACCCCGCCCATGGAGCAAACCAGCGTGCGGGCCCAGGGGGc                                                                                                >  2:45688/2‑150 (MQ=255)                                             cccTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGc                                                                                                >  1:25448/1‑150 (MQ=255)                                                     aaCCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATc                                                                                        >  2:664821/1‑150 (MQ=255)                                                        cTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACGGGATTTCTGGCCCAGGTGGCCAAGTATCCCa                                                                                     >  1:641347/1‑150 (MQ=255)                                                              tCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTg                                                                               <  2:392120/150‑1 (MQ=255)                                                                  cAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCaa                                                                                                                              >  2:682275/1‑99 (MQ=255)                                                                  cAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCaa                                                                                                                              <  1:682275/99‑1 (MQ=255)                                                                  cAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCgg                                                                           >  1:100450/1‑150 (MQ=255)                                                                   aaGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCggg                                                                          >  1:358362/1‑149 (MQ=255)                                                                   aaGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGt                                                                          >  1:567148/1‑150 (MQ=255)                                                                    aGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTg                                                                         >  1:731117/1‑150 (MQ=255)                                                                          gCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGc                                                                   >  2:96872/1‑150 (MQ=255)                                                                           ccTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCAAAGTATCCCATTGCTGGCGGTGAGCGGCt                                                                  >  1:120234/1‑150 (MQ=255)                                                                               gctggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGt                                                              >  2:388694/1‑150 (MQ=255)                                                                                 tggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGa                                                            >  2:213451/1‑150 (MQ=255)                                                                                 tggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGa                                                            <  1:467424/150‑1 (MQ=255)                                                                                     gTCTGGAATGCCACCAGCACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGc                                                        >  1:341213/1‑150 (MQ=255)                                                                                      tCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGcc                                                       >  1:265178/1‑150 (MQ=255)                                                                                                  ccaGTACAGGGCTTTCTGCTTTTTTCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATtcacctca                                           >  2:150810/1‑150 (MQ=255)                                                                                                  ccaGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATtcacctca                                           >  1:501598/1‑150 (MQ=255)                                                                                                  ccaGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCCGAGTGACAGCCTGATtcacctca                                           >  2:16492/1‑150 (MQ=255)                                                                                                          gggCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATc                                   <  1:367970/150‑1 (MQ=255)                                                                                                              tttCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTg                                                                                                  >  2:61081/1‑83 (MQ=255)                                                                                                              tttCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTg                                                                                                  <  1:61081/83‑1 (MQ=255)                                                                                                              tttCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTg                               >  1:539685/1‑150 (MQ=255)                                                                                                                         aTCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGcc                    >  1:143325/1‑150 (MQ=255)                                                                                                                           cACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCcgc                  <  2:25448/150‑1 (MQ=255)                                                                                                                           cACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCAAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCcgc                  <  2:120234/150‑1 (MQ=255)                                                                                                                              ccACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGt                                                              >  2:708710/1‑103 (MQ=255)                                                                                                                              ccACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGt                                                              <  1:708710/103‑1 (MQ=255)                                                                                                                               cacaTCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTc              <  1:150810/150‑1 (MQ=255)                                                                                                                                acaTCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCt             <  2:731117/150‑1 (MQ=255)                                                                                                                                acaTCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCACTCCTGCCGGTGAGCCTGAAACTGACAGCGCTACCCACTTCACCGCCATCGCTGATGGCCCGGCCGCGTTCt             <  1:16492/150‑1 (MQ=255)                                                                                                                                acaTCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTAGCCCTTTGCTGGCGGTGAGCGGCAGAGATACAGCTTTATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCt             >  1:192836/1‑150 (MQ=255)                                                                                                                                  aTCGCGCTCGGTACGTCGGGTTACACCCCGACCAAcgagcgcgatgtgggtgatctcggcagaaagccctgtactggtggcattccagactccagccaggcctttcttggtgatcacaggttgtaaaggggtactcataaaacagcct             <  2:786452‑M2/148‑114 (MQ=255)                                                                                                                                  aTCGCGCTCGGTACGTCGGGTTACACCCCGACCAAcgagcgcgatgtgggtgatctcggcagaaagccctgtactggtggcattccagactccagccaggcctttcttggtgatcacaggttgtaaaggggtactcataaaacagcct             >  1:786452‑M2/1‑35 (MQ=255)                                                                                                                                  aTCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGa                                                    <  1:157779/109‑1 (MQ=255)                                                                                                                                  aTCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGa                                                    >  2:157779/1‑109 (MQ=255)                                                                                                                                     gcgcTCGGTACGTCGGGTTACACCCCGACCAAcgagcgcgatgtgggtgatctcggcagaaagccctgtactggtggcattccagactccagccaggcctttcttggtgatcacaggttgtaaaggggtactcataa                     >  2:775567‑M2/1‑32 (MQ=255)                                                                                                                                     gcgcTCGGTACGTCGGGTTACACCCCGACCAAcgagcgcgatgtgggtgatctcggcagaaagccctgtactggtggcattccagactccagccaggcctttcttggtgatcacaggttgtaaaggggtactcataa                     <  1:775567‑M2/137‑106 (MQ=255)                                                                                                                                     gcgcTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATtca                                                <  2:454108/110‑1 (MQ=255)                                                                                                                                     gcgcTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATtca                                                >  1:454108/1‑110 (MQ=255)                                                                                                                                      cgcTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGc       <  1:96872/150‑1 (MQ=255)                                                                                                                                         tCGttggtcggggtgtaacccgacgtaccgagcgcgatgtgggtgatctcggcagaaagccctgtactggtggcattccagactccagccaggcctttcttggtgatcacaggttgtaaaggggtactcataaaacagcctccatcgtac    >  2:572231‑M1/1‑3 (MQ=255)                                                                                                                                           gttggtcggggtgtaacccgacgtaccgagcgcgatgtgggtgatctcggcagaaagccctgtactggtggcattccagactccagccaggcctttcttggtgatcacaggttgtaaaggggtactcataaagcagcctccatcgtaccc  >  1:93680‑M1/1‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                      CCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAA  >  NC_002947/3436882‑3437169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.