| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3676903 = | 40 (1.260) | 8 (0.270) | 8/236 | NT | 16.3% | intergenic (‑15/‑138) | PP_3241/PP_3242 | hypothetical protein/GGDEF domain‑containing protein |
| ? | NC_002947 | 3676936 = | 44 (1.460) | intergenic (‑48/‑105) | PP_3241/PP_3242 | hypothetical protein/GGDEF domain‑containing protein | |||||
CCGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCC > NC_002947/3676755‑3677052 | ccGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTaaa < 1:721032/150‑1 (MQ=255)ccGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCACAACACCATGGAGAAACCCACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTaaa > 2:330487/1‑150 (MQ=255) cGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAAc > 1:357598/1‑150 (MQ=255) gcgaaaagcccatcgtcgtcctgtttcctggctgcgcacattggaatccctggccctacggcgttcgccgtcttcactatagttcagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgccttcaccctcAAcc < 2:152933‑M1/4‑1 (MQ=255) ttCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGa > 2:701814/1‑150 (MQ=255) cGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTaaa > 2:790864/1‑137 (MQ=255) cGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTATGATGAAGAGACTATTCATGCTTCACTCCTTTaaa < 1:790864/137‑1 (MQ=255) tCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTAc > 1:1599/1‑150 (MQ=255) tCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTAc > 2:705731/1‑150 (MQ=255) ctggctgcgcacattggaatccctggccctacggcgttcgccgtcttcactatagttcagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgccttcaccctcAACCGTA‑CGCGACCTCAATGTCGCGTACgg > 2:195102‑M1/120‑149 (MQ=255) ctggctgcgcacattggaatccctggccctacggcgttcgccgtcttcactatagttcagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgccttcaccctcAACCGTA‑CGCGACCTCAATGTCGCGTACgg < 1:195102‑M1/30‑1 (MQ=255) ctgcgcacattggaatccctggccctacggcgttcgccgtcttcactatagttcagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgccttcaccctcAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGa > 1:823412‑M1/116‑150 (MQ=255) cTGCATCGACGAAATCATCGAAAGCCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTCATGAAGAGACTAGTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGat < 1:318157/150‑2 (MQ=255) gcgcacattggaatccctggccctacggcgttcgccgtcttcactatagttcagcgtcgcacggccggaaccggcggcaaaaaacattaaacctcttccacgccttcaccctcAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAgg > 1:108129‑M1/114‑150 (MQ=255) tcGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGaaaa > 1:70240/1‑150 (MQ=255) ctggccctacggcgttcgccgtcttcactatagttcagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgccttcaccctcAACCGTGGCGCGACCTCAATGTCGCGTa < 1:432163‑M1/28‑1 (MQ=255) ctggccctacggcgttcgccgtcttcactatagttcagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgccttcaccctcAACCGTGGCGCGACCTCAATGTCGCGTa > 2:432163‑M1/98‑125 (MQ=255) gAAGTCGCTGCCATTGCGTGCACCTATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGt < 1:814234/150‑1 (MQ=255) gCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCttt < 1:501384/150‑1 (MQ=255) ccATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCtttt > 2:314697/1‑150 (MQ=255) cGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTgccg < 1:705731/150‑1 (MQ=255) gTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGtt > 2:760642/1‑134 (MQ=255) gTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGtt > 2:760827/1‑134 (MQ=255) gTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGtt < 1:760642/134‑1 (MQ=255) gTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGtt < 1:760827/134‑1 (MQ=255) gCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACCCCTTGAAACCGTGGCGCGACCTCAATGTCGCGTACGGGTGAGGCTGAAGCCGGGGAAAAGGTTTAATCTTTTCTAccgccg > 2:252165/1‑150 (MQ=255) ccGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGtt > 1:748498/1‑150 (MQ=255) aGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCgggg > 2:159993/1‑113 (MQ=255) aGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCgggg < 1:159993/113‑1 (MQ=255) gCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGc < 2:70240/150‑1 (MQ=255) gCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGc < 2:1599/150‑1 (MQ=255) agcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgccttcaccctcAACCGTGGCGCGACCTCAATGTCGCGTAc > 2:478891‑M1/62‑90 (MQ=255) agcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgccttcaccctcAACCGTGGCGCGACCTCAATGTCGCGTAc < 1:478891‑M1/29‑1 (MQ=255) aTGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAAc > 1:2223/1‑150 (MQ=255) ggAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACta < 1:314697/150‑1 (MQ=255) gAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCGGGTTCCGGCAGTGCGACGCTGAACtat > 1:77867/1‑150 (MQ=255) aaaaaCCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACtata < 1:130793/150‑1 (MQ=255) cgTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGc < 2:748498/150‑1 (MQ=255) gTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGATAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCCGAACTGATGTGGAGACGGCg > 2:157191/1‑150 (MQ=255) tgatgaAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGcc < 2:201668/117‑1 (MQ=255) tgatgaAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGcc > 1:201668/1‑117 (MQ=255) gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGa > 1:635357/1‑67 (MQ=255) gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGa < 2:635357/67‑1 (MQ=255) gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGtt > 2:455673/1‑83 (MQ=255) gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGtt < 1:455673/83‑1 (MQ=255) gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAg > 1:715530/1‑150 (MQ=255) gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAg > 1:247942/1‑150 (MQ=255) gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAg < 2:247942/150‑1 (MQ=255) aCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGa < 1:793873/58‑1 (MQ=255) aCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGa > 2:793873/1‑58 (MQ=255) gCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTc < 2:357598/150‑1 (MQ=255) cACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTcc < 2:427412/90‑1 (MQ=255) cACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTcc > 1:427412/1‑90 (MQ=255) tCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAAtgtg > 1:640081/1‑150 (MQ=255) ctgtAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGaa > 1:30122/4‑112 (MQ=255) cTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGaa < 2:30122/112‑1 (MQ=255) cTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTgcg > 1:551342/1‑150 (MQ=255) tttAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTgcgc > 1:723242/1‑150 (MQ=255) AACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGCAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCTAGGGATTCCAATGTGAGTAGcc < 2:569054‑M1/150‑1 (MQ=255) | CCGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCC > NC_002947/3676755‑3677052 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |