New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5178017 =	23 (0.730)	3 (0.100)	3/238	NT	12.5%	coding (16/1221 nt)	PP_4553	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	5178057 =	20 (0.660)					coding (479/486 nt)	PP_4554	hypothetical protein

TCGCGGGTTGGCGGGGATACCGTCGCGTTGCCAGCGTTCGACGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGC  >  NC_002947/5177868‑5178161                                                                                                                                                      |                                                                                                                                                 tttgacgaggaacagggcaaaacccgctacaccgcccgtgcctggcactggaatgccaccgactgccgggcccatgaagaaatgggcttccaccagggctggggagaaagcctggaccgcctggtggaggtggtgacccagcggatgccc                                                                                                                                                  >  2:261787‑M1/150‑150 (MQ=255) tttgacgaggaacagggcaaaacccgctacaccgcccgtgcctggcactggaatgccaccgactgccgggcccatgaagaaatgggcttccaccagggctggggagaaagcctggaccgcctggtggaggtggtgacccagcggatgccc                                                                                                                                                  <  1:360907‑M1/1‑1 (MQ=255)   tgacgaggaacagggcaaaacccgctacaccgcccgtgcctggcactggaatgccaccgactgccgggcccatgaagaaatgggcttccaccagggctggggagaaagcctggaccgcctggtggaggtggtgacccagcggatgccCGa                                                                                                                                                >  2:462685‑M1/148‑150 (MQ=255)       gTTGGCGGGGATACCGTCGCGTTGCCAGCGTTCGACGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTc                                                                                                                                            <  2:333550/150‑1 (MQ=255)                   aCCGTCGCGTTGCCAGCGTTCGACGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCCCCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTg                                                                                                                                <  1:75131/150‑1 (MQ=255)                    ccGTCGCGTTGCCAGCGTTCGACGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTgg                                                                                                                               >  1:155039/1‑150 (MQ=255)                                         cctggcactggaatgccaccgactgccgggcccatgaagaaatgggcttccaccagggctggggagaaagcctggaccgcctggtggaggtggtgacccagcggatgccCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCgg                                                                                                          >  1:600538‑M1/110‑150 (MQ=255)                                         aCGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCgg                                                                                                          <  1:508189/150‑1 (MQ=255)                                              aaTGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCggg                                                                                                         <  1:37856/146‑1 (MQ=255)                                              aaTGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCggg                                                                                                         >  2:37856/1‑146 (MQ=255)                                              aaTGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATc                                                                                                     <  2:155039/150‑1 (MQ=255)                                                 gaagaaGCCACAATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCCCCCGTATGCGCCGCGACTCCTGCCAGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGc                                                                                                  <  2:380025/150‑1 (MQ=255)                                                         catcatGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTcac                                                                                          <  1:609282/150‑1 (MQ=255)                                                                 atgGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTcca                                                                                  >  2:852400/1‑150 (MQ=255)                                                                         ctcGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCgg                                                                          >  1:671344/1‑150 (MQ=255)                                                                          atgaagaaatgggcttccaccagggctggggagaaagcctggaccgcctggtggaggtggtgacccagcggatgccCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTgg                                                                                               >  1:720731‑M1/77‑128 (MQ=255)                                                                          atgaagaaatgggcttccaccagggctggggagaaagcctggaccgcctggtggaggtggtgacccagcggatgccCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTgg                                                                                               <  2:720731‑M1/52‑1 (MQ=255)                                                                               cAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAgg                                                                    <  1:279515/150‑1 (MQ=255)                                                                                  gTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCtt                                                                 >  1:23928/1‑150 (MQ=255)                                                                                        aTCGCCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTccc                                                           <  1:244777/150‑1 (MQ=255)                                                                                        aTCACCCAGCAAGCGGGTCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTccc                                                           <  2:714814/150‑1 (MQ=255)                                                                                               aGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCt                                                    >  1:774945/1‑150 (MQ=255)                                                                                                 cAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCtgg                                                  <  2:23928/150‑1 (MQ=255)                                                                                                  aaGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCtggt                                                 <  2:774945/150‑1 (MQ=255)                                                                                                                                     cTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCAt                                                                                                                 >  1:528455/1‑51 (MQ=255)                                                                                                                                     cTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCAt                                                                                                                 <  2:528455/51‑1 (MQ=255)                                                                                                                                     cTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTg              >  1:607763/1‑150 (MQ=255)                                                                                                                                          ggTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCAtt         >  1:788285/1‑150 (MQ=255)                                                                                                                                           gTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTc        >  1:447814/1‑150 (MQ=255)                                                                                                                                                 aGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGc  >  1:143115/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                 TCGCGGGTTGGCGGGGATACCGTCGCGTTGCCAGCGTTCGACGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGC  >  NC_002947/5177868‑5178161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.