| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5454757 = | 15 (0.470) | 22 (0.710) | 19/244 | NT | 59.9% | intergenic (+39/+122) | PP_4791/PP_4792 | transposase/hypothetical protein |
| ? | NC_002947 | 5545369 = | NA (NA) | intergenic (‑461/+416) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
CTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAGCCGGTGAATCAGTAGAACACCCGATAC > NC_002947/5454609‑5454897 | gagagtggcccaaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAg < 2:271708‑M1/2‑1 (MQ=255)gagagtggcccaaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAg < 1:6882‑M1/2‑1 (MQ=255) agagtggcccaaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGc > 1:322718‑M1/148‑150 (MQ=255) agtggcccaaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCgg > 2:269‑M1/146‑150 (MQ=255) agtggcccaaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCgg > 1:337937‑M1/146‑150 (MQ=255) gtggcccaaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagcaataacagtgggttatcttttgtttgatagaAGCggg > 1:68831‑M1/145‑150 (MQ=255) gtggcccaaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCggg > 2:509817‑M1/145‑150 (MQ=255) gtggcccaaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCggg > 2:761048‑M1/145‑150 (MQ=255) gtggcccaaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCggg > 1:206329‑M1/145‑150 (MQ=255) cccaaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTa < 1:42791‑M1/10‑1 (MQ=255) ccaaatggcataggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTAc < 2:57658‑M1/11‑1 (MQ=255) caaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCgg > 2:768770‑M1/139‑143 (MQ=255) caaatggcatcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCgg < 1:768770‑M1/5‑1 (MQ=255) gTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTAAACCcgctc < 1:468841/150‑3 (MQ=12) tcggcgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATAc > 1:559277‑M1/130‑150 (MQ=255) gaggagTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATAAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGGTTACCCGCGAATACg > 2:628960/1‑150 (MQ=255) cgttaatccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTa < 2:72180‑M1/25‑1 (MQ=255) ttCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTAAACCcgctctca > 2:202215/1‑137 (MQ=255) ttCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTAAACCcgctctca < 1:202215/142‑6 (MQ=12) atccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCgg < 2:150993‑M1/5‑1 (MQ=255) atccctgtcggcacagcttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCgg > 1:150993‑M1/121‑125 (MQ=255) aGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAGCg > 2:105697/1‑150 (MQ=255) cttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCggg > 1:609703‑M1/105‑110 (MQ=255) cttgctgtgaccacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCggg < 2:609703‑M1/6‑1 (MQ=255) tgctgtgactacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAAcggcgg > 2:199082‑M1/103‑150 (MQ=255) cGGCAGGTCGGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCggg < 1:301785/150‑1 (MQ=255) accacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGgaga > 1:72180‑M1/96‑150 (MQ=255) cacgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGAtt > 1:57658‑M1/94‑150 (MQ=255) acgtatagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTg > 2:291776‑M1/93‑150 (MQ=255) tagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACgg < 2:206429‑M1/23‑1 (MQ=255) tagaagagtgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACgg > 1:206429‑M1/88‑110 (MQ=255) tgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAgcagggcag < 1:185882‑M1/71‑1 (MQ=255) tgaacacttcgccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAgcagggcag < 2:54580‑M1/71‑1 (MQ=255) gCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACACTGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAgcagggcag < 1:567714/150‑1 (MQ=255) gccgccattgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTcgc < 1:182515‑M1/81‑1 (MQ=255) attgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCaa > 1:54580‑M1/64‑150 (MQ=255) ttgaccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCCAGGGTGCGCGGCGGGGTGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAg < 1:616503‑M1/88‑1 (MQ=255) gcccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatataAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGcc > 2:421581‑M1/61‑150 (MQ=255) ccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCcagca > 1:761243‑M1/59‑123 (MQ=255) ccccgcgcgcctgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCcagca < 2:761243‑M1/65‑1 (MQ=255) tgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGt < 2:715319‑M1/39‑1 (MQ=255) tgtttttttcgctagaaagaacagtgggttatcttttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGt > 1:715319‑M1/48‑86 (MQ=255) tttttgtcggtagaaaggcccgcggggtatcgtttgtttgatagaAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTGCGCGGGCAAGCCCGGTCCTACAGGGGa > 2:185882‑M1/46‑150 (MQ=255) gCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAggg < 2:822855/147‑1 (MQ=255) gCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAggg > 1:822855/1‑147 (MQ=255) gCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGGGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGAt > 1:611948/1‑150 (MQ=255) gCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAGCGGTGAACGGCGGGTGGAGATGGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAg < 1:105697/150‑1 (MQ=255) aGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAGCCgg > 1:827214/1‑150 (MQ=255) aaaaCAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAGCCGGTg < 1:115415/150‑1 (MQ=255) aTTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGc > 2:131549/1‑104 (MQ=255) aTTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGc < 1:131549/104‑1 (MQ=255) tttgatagaAGCGGGGTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCCAGCCCGGTCCTACAGGGGATTATGTAAGCCGGTGAATCAGTAGAACACCCGATAc < 1:626450‑M1/141‑1 (MQ=255) | CTTATGTTGAACAAGGTCTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAGCCGGTGAATCAGTAGAACACCCGATAC > NC_002947/5454609‑5454897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |