New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1419584	22 (0.690)	3 (0.130)	3/184	NT	19.2%	intergenic (‑67/+70)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419614	9 (0.380)					intergenic (‑97/+40)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

AGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGC  >  NC_002947/1419466‑1419762                                                                                                                                                      |                                                                                                                                                     aGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACc                                                                                                                                                     >  2:705180‑M2/1‑149 (MQ=255)     gCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgt                                                                                                                                                 <  1:610496‑M2/150‑6 (MQ=255)       gggtCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgg                                                                                                                                               >  1:148725‑M2/2‑143 (MQ=255)       gggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgtg                                                                                                                                                >  2:276685‑M1/83‑150 (MQ=255)       aGGTCTTGCCGACTGGGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTATG‑TTCATTAATGACTATGGTAGCCTCGGCTGGCCTCTTCTCCAGCACGAAAGCTACCCCAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                                                                                                                               <  1:831764/150‑1 (MQ=255)         gTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtggga                                                                                                                                             >  1:131428‑M2/1‑141 (MQ=255)          tCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTAGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggag                                                                                                                                            <  1:691919‑M2/150‑11 (MQ=255)             tGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCCCGCCCGCGCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgg                                                                                                                                         >  1:343193‑M2/1‑137 (MQ=255)                 gACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgt                                                                                                                                     >  1:835864‑M2/1‑133 (MQ=255)                  gtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGt                                                                                                                                     >  1:389034‑M1/72‑150 (MQ=255)                   ttgtggTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgc                                                                                                                                   >  1:440437‑M2/2‑131 (MQ=255)                        gtggGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTGGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGGGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcg                                                                                                                              <  1:532902‑M2/150‑25 (MQ=255)                          gggTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcacgcccgctcc                                                                                                                            >  1:250391‑M2/1‑124 (MQ=255)                            gTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaaga                                                                                                                          >  2:610496‑M2/1‑122 (MQ=255)                                  ttgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGCGCGGGCGTGCCCGCGAAGAGGCCTg                                                                                                                    >  1:756092/1‑150 (MQ=255)                                   tgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGa                                                                                                                   <  2:444540/150‑1 (MQ=255)                                    gtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGAc                                                                                                                  <  2:468390/150‑1 (MQ=255)                                            ggTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAAt                                                                                                          <  2:532902/150‑1 (MQ=255)                                            ggTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAAt                                                                                                          <  2:756092/150‑1 (MQ=255)                                                ggCATTGTTTTGTTTCCCTGGATCCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgg                                                                                                                                               <  2:218813‑M2/109‑8 (MQ=255)                                                ggCATTGTTTTGTTTCCCTGGATCCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgg                                                                                                                                               >  1:218813‑M2/1‑102 (MQ=255)                                                       ttttgtttCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACc                                                                                                                                                     >  2:174967‑M2/1‑95 (MQ=255)                                                       ttttgtttCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACc                                                                                                                                                     <  1:174967‑M2/96‑2 (MQ=255)                                                       ttttgtttCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGa                                                                                               >  2:383669/1‑150 (MQ=255)                                                                cctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGa                                                                                                                                             >  2:383864‑M1/26‑96 (MQ=255)                                                                cctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGa                                                                                                                                             <  1:383864‑M1/71‑1 (MQ=255)                                                                                      gCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACc                                                                                                                                                     >  2:470058‑M2/1‑65 (MQ=255)                                                                                      gCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACc                                                                                                                                                     <  1:470058‑M2/66‑2 (MQ=255)                                                                                      gCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGc                                                                 <  2:691919/150‑1 (MQ=255)                                                                                        tGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCaa                                                               <  2:488214/150‑1 (MQ=255)                                                                                            CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGNCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGc                                                           <  1:565070‑M1/150‑1 (MQ=255)                                                                                                 CGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCAGCaa                                                      >  1:847025‑M1/1‑150 (MQ=255)                                                                                                           CCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCg                                            <  2:770694‑M1/150‑1 (MQ=255)                                                                                                            CCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGa                                           >  1:383669‑M1/1‑150 (MQ=255)                                                                                                                    acaGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgc                                   <  1:495741‑M2/150‑116 (MQ=255)                                                                                                                    ACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGAcc                                                                         <  2:815316‑M1/112‑1 (MQ=255)                                                                                                                    ACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGAcc                                                                         >  1:815316‑M1/1‑112 (MQ=255)                                                                                                                      aGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgctt                                 >  1:414100‑M2/1‑33 (MQ=255)                                                                                                                        gTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttct                               <  1:362148‑M2/150‑120 (MQ=255)                                                                                                                                  gTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCAt                     >  1:479010/1‑150 (MQ=255)                                                                                                                                       tGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCAt                <  1:59901/150‑1 (MQ=255)                                                                                                                                                tggtgACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATg               <  2:195063/142‑1 (MQ=255)                                                                                                                                                tggtgACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATg               >  1:195063/1‑142 (MQ=255)                                                                                                                                                  gtgACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGcc     <  2:565070/150‑1 (MQ=255)                                                                                                                                                     aCCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAAGGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGc  >  1:790377/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                     AGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCT‑GGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGC  >  NC_002947/1419466‑1419762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.