New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2057838 =	33 (1.040)	6 (0.200)	4/240	NT	12.4%	intergenic (+11/+117)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2057936 =	53 (1.730)					intergenic (+109/+19)	PP_1832/PP_1833	oxidase/hypothetical protein

ATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGT  >  NC_002947/2057803‑2058072                                                                                                                                      |                                                                                                                                          aTTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACAcc                                                                                                                           >  1:103450/1‑150 (MQ=255)     cTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACAATCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTc                                                                                                                       >  1:700907/1‑150 (MQ=255)            tCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCCCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGtc                                                                                                                >  1:602699/1‑149 (MQ=255)              gacgaGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCAAGTTCAGGCAATACACCCCTCAGCGGTAgg                                                                                                              >  1:218146/1‑150 (MQ=255)                        aaTCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCggcaaggc                                                                                                    <  1:754330/150‑1 (MQ=255)                         aTCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCggcaaggca                                                                                                   >  1:243119/1‑150 (MQ=255)                          tCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCggcagggcaa                                                                                                  >  1:77046/1‑150 (MQ=255)                          tCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCggcaaggcaa                                                                                                  >  1:815799/1‑150 (MQ=255)                          tCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCggcaaggcaa                                                                                                  >  1:815724/1‑150 (MQ=255)                                   cggccgCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCgctgc‑t                                                                                        >  2:143048/1‑150 (MQ=255)                                        gCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATacac                                                                                                                            <  1:535629/110‑1 (MQ=255)                                        gCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATacac                                                                                                                            >  2:535629/1‑110 (MQ=255)                                          ttCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTg                                                                                 >  1:503052/1‑150 (MQ=255)                                          ttCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTg                                                                                 >  2:681872/1‑150 (MQ=255)                                            cgcgGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTgca                                                                               <  1:143048/150‑1 (MQ=255)                                                 gTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATc                                                                          <  2:243119/150‑1 (MQ=255)                                                     aCCCGCTCCTACATTGACTGCGCGATGCCTAAGGGAGGCGGAACCGTCGGTCGTAGGAGCGGGCTCACCCGCGACAAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGGCGGCAAGGCAAACGGCTGCGTGGACCT‑CAGCATCgagg                                                                      >  2:794021/1‑149 (MQ=255)                                                      cccgctcctacgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGAt                                                                     >  2:542033‑M2/81‑150 (MQ=255)                                                      cccgctcctacgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagaggccAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGAt                                                                     >  1:79153‑M2/81‑150 (MQ=255)                                                      cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCgg                                                                                                          >  1:773114/1‑114 (MQ=255)                                                      cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCgg                                                                                                          <  2:773114/114‑1 (MQ=255)                                                      cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGAt                                                                     >  1:751264/1‑150 (MQ=255)                                                      cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGAt                                                                     <  1:561498/150‑1 (MQ=255)                                                      cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGAt                                                                     >  2:618515/1‑150 (MQ=255)                                                      cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGAt                                                                     >  1:826751/1‑150 (MQ=255)                                                       ccgctcctacgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCgct                                                                                            >  2:834493‑M2/80‑127 (MQ=255)                                                       ccgctcctacgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCgct                                                                                            <  1:834493‑M2/48‑1 (MQ=255)                                                       ccgctcctacgaccgaaggttgctccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagaggccAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATg                                                                    >  2:715748‑M2/80‑150 (MQ=255)                                                       ccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATg                                                                    >  1:760898/1‑150 (MQ=255)                                                            ccTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCgg                                                               <  2:815724/150‑1 (MQ=255)                                                            ccTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCgg                                                               <  1:702365/150‑1 (MQ=255)                                                            ccTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCgg                                                               <  2:815799/150‑1 (MQ=255)                                                              tACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCa                                                             >  1:158140/1‑150 (MQ=255)                                                                cATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTTGGTCGTAGGAGCGGGCTCACTCGCGAAGAGGCCAGTTCAGGCCATACACCCCTCAGCGGAAGATCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAAt                                                           <  1:794021/150‑1 (MQ=255)                                                                 aTTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCAGCGAAGAGGCCAGTCCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCTAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAAtt                                                          <  2:98104/150‑1 (MQ=255)                                                                       tGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTgg                                                    >  1:842505/1‑150 (MQ=255)                                                                                 cTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAAcc                                                                                               <  1:801702/98‑1 (MQ=255)                                                                                 cTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAAcc                                                                                               >  2:801702/1‑98 (MQ=255)                                                                                    aGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCGGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAg                                       <  2:392221/150‑1 (MQ=255)                                                                                    aGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAg                                       >  2:114216/1‑150 (MQ=255)                                                                                    aGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAg                                       <  2:792758/150‑1 (MQ=255)                                                                                    aGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAAAAGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAg                                       <  2:503052/150‑1 (MQ=255)                                                                                             cAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAgg                                      <  2:181662/142‑1 (MQ=255)                                                                                             cAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAgg                                      >  1:181662/1‑142 (MQ=255)                                                                                                ccGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCCCTGGCCTCTTCGGCCAGGTCACGACGGAt                           <  1:582781/150‑1 (MQ=255)                                                                                                  gtcggtcgTAGGTGCGTGTCCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATgg                         <  2:602699/150‑1 (MQ=255)                                                                                                    tcaatgtaggagcgggttcacccgcgaagcggccAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGTCTCTTCGGCCAGGTCACGACGGATGGCa                       <  1:542033‑M2/116‑1 (MQ=255)                                                                                                            ggAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGc               <  1:114216/150‑1 (MQ=255)                                                                                                               gCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGctc                                                                                   >  2:801943/1‑79 (MQ=255)                                                                                                               gCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGctc                                                                                   <  1:801943/79‑1 (MQ=255)                                                                                                               gCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCa            <  2:751264/150‑1 (MQ=255)                                                                                                                cGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAg           <  2:79153/150‑1 (MQ=255)                                                                                                                  ggTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTCGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGa         <  2:826751/150‑1 (MQ=255)                                                                                                                     tCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAg      <  2:760898/150‑1 (MQ=255)                                                                                                                      aaCCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGc     >  2:806287/2‑150 (MQ=255)                                                                                                                       aCCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCt    <  1:618515/150‑1 (MQ=255)                                                                                                                         ccGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATc                                                                          <  2:794276/78‑1 (MQ=255)                                                                                                                         ccGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATc                                                                          >  1:794276/1‑78 (MQ=255)                                                                                                                         ccGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGt  >  2:713368/1‑150 (MQ=255)                                                                                                                                      |                                                                                                                                          ATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGC‑TGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGT  >  NC_002947/2057803‑2058072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.