New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4259961	25 (0.790)	4 (0.130)	4/240	NT	13.1%	coding (396/1059 nt)	PP_3733	hydrolase
	?	NC_002947	= 4259981	29 (0.950)					coding (376/1059 nt)	PP_3733	hydrolase

TGCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAGGCCGAGCGGAA  >  NC_002947/4259854‑4260113                                                                                                                                |                                                                                                                                      tgCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCa                                                                                                                  <  2:74103/148‑1 (MQ=255) tgCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCa                                                                                                                  >  1:74103/1‑148 (MQ=255)  gCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAggg                                                                                                               >  2:636118/1‑150 (MQ=255)                        aacATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCAcc                                                                                         >  2:402429/3‑150 (MQ=255)                            tCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑cc                                                                                                                              <  1:736224/109‑1 (MQ=255)                            tCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATACATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑cc                                                                                                                              >  2:736224/1‑109 (MQ=255)                                              tGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGc                                                                   >  2:796830/1‑150 (MQ=255)                                               gTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGcc                                                                  <  1:690877/150‑1 (MQ=255)                                                    tGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGgc                                                                                                                                     <  2:699099‑M2/79‑3 (MQ=255)                                                    tGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGgc                                                                                                                                     >  1:699099‑M2/1‑77 (MQ=255)                                                      ttCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATcct                                                           >  1:76821/1‑149 (MQ=255)                                                       tCGATCCCGCCCTGGCCCTGCGACACCCCGTCATTTATGCCGTCGCGAAACCGCCGGGACCCTCTACAGTTAACGCCGAACCCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCca                                                           <  1:574707/150‑1 (MQ=255)                                                              cGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCg                                                   >  2:481708/1‑150 (MQ=255)                                                                 cctggccctgCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCACCCTGATGGCCACCCGGCGCGGGCAGTGCTGCATGCCCCATCCACAGGCTCGGGc                                                >  2:361157/1‑150 (MQ=255)                                                                      ccctgCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTc                                           >  1:648861/1‑150 (MQ=255)                                                                           cAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGcc                                      >  2:415082/1‑150 (MQ=255)                                                                               acCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTg                                  >  2:82264/1‑150 (MQ=255)                                                                               acCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTg                                  <  1:796830/150‑1 (MQ=255)                                                                                cccAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTgg                                 >  2:509452/1‑150 (MQ=255)                                                                                 ccAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATg                                                                                               <  1:94378/87‑1 (MQ=255)                                                                                 ccAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATg                                                                                               >  2:94378/1‑87 (MQ=255)                                                                                   aGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGtct                              >  1:777488/1‑150 (MQ=255)                                                                                    gTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGtctc                             <  2:76821/150‑1 (MQ=255)                                                                                     tCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTcc                            <  1:636118/150‑1 (MQ=255)                                                                                         atctCCATACGCCAAACGGCTGAGCCTGCACGCTGGCCTGGCCGAT‑CCCCCCCCGCGCCAAGCTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGAc                        <  2:376362/147‑1 (MQ=255)                                                                                              cATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGAccagat                   >  1:376362/1‑146 (MQ=255)                                                                                                tGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGgccgtttcgcgcatggatcaatgactgggtgttgcagggccagggcggtatcgaacagcta                                                                          >  2:294337‑M2/1‑33 (MQ=255)                                                                                                tGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGgccgtttcgcgcatggatcaatgactgggtgttgcagggccagggcggtatcgaacagcta                                                                          <  1:294337‑M2/94‑62 (MQ=255)                                                                                                       aaCGGCTGGGCCTGCACGCCGGCCTGgccgtttcgcgcatggatcaatgactgggtgttgcagggccagggcggtatcgaacagctacagatggtc                                                                 <  2:441166‑M2/96‑71 (MQ=255)                                                                                                       aaCGGCTGGGCCTGCACGCCGGCCTGgccgtttcgcgcatggatcaatgactgggtgttgcagggccagggcggtatcgaacagctacagatggtc                                                                 >  1:441166‑M2/1‑26 (MQ=255)                                                                                                         cGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑GCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGACACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAGGCCGa        >  2:20682/1‑150 (MQ=255)                                                                                                           gCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAGGCCGAGc      <  1:133559/150‑1 (MQ=255)                                                                                                              gggCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAGGCCGAGCGGa   <  2:777488/150‑1 (MQ=255)                                                                                                                  cTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAGGCCGAGCGGaa  <  2:490214/147‑1 (MQ=255)                                                                                                                  cTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAGGCCGAGCGGaa  >  1:490214/1‑147 (MQ=255)                                                                                                                        gCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCaa              >  2:677251/1‑129 (MQ=255)                                                                                                                        gCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCaa              <  1:677251/129‑1 (MQ=255)                                                                                                                                |                                                                                                                                      TGCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAGGCCGAGCGGAA  >  NC_002947/4259854‑4260113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.