New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4662079 =	27 (0.850)	3 (0.100)	3/232	NT	13.3%	coding (897/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G
	?	NC_002947	4662171 =	14 (0.470)					coding (989/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G

ACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCGGTGAAGACCTGA  >  NC_002947/4662028‑4662317                                                                                                                                                |                                                                                                                                                   acaACGGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTa                                                                                                                                              <  1:12289/150‑1 (MQ=255)                cACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCAt                                                                                                                               <  1:513658/150‑1 (MQ=255)                    aaGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGaa                                                                                                                           <  2:316679/150‑1 (MQ=255)                           gCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATCGATGCTGGCg                                                                                                                    >  2:610202/1‑150 (MQ=255)                                     cgccCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCcg                                                                                                          >  2:381490/1‑150 (MQ=255)                                        ccTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGt                                                                                                       >  2:851256/1‑150 (MQ=255)                                                    CGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCAAGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACgcctggagga                                                                                           >  1:52612‑M1/1‑146 (MQ=255)                                                        gaccagctcacgcaggccgtagttgcttccttggctggcgcgtggcgagccgataccgacgatggtacggccgcgtagcaggtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAAc                                                                                       >  1:22447‑M2/89‑150 (MQ=255)                                                           cagctcacgcaggccgtagttgctttcgaggctggcgcgtggcgagccgataccgacgatggtacggccgcgtagcaggtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTg                                                                                    >  2:272515‑M2/86‑150 (MQ=255)                                                             gCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACCCGGTCATTGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCt                                                                                  <  1:363999/150‑1 (MQ=255)                                                                     aggccgtagttgctttcgaggctggcgcgtggcgagccgataccgacgatggtacggccgcgtagcaggtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAacaaca                                                                          <  1:272515‑M2/75‑1 (MQ=255)                                                                        gTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGcc                                                                       <  1:176841/150‑1 (MQ=255)                                                                                       tCGGCTCGCCACGCGCCAGCCCCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCTCCGAGTACTCCTACGCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGa                                                        >  2:67103/1‑150 (MQ=255)                                                                                                        aGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGcc                                                                                                  <  1:783139/91‑1 (MQ=255)                                                                                                        aGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGcc                                                                                                  >  2:783139/1‑91 (MQ=255)                                                                                                            tCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGAcc                                   >  2:231662/1‑150 (MQ=255)                                                                                                                           gCCTGCGTGGGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACGACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCg                    <  2:238840/150‑1 (MQ=255)                                                                                                                                  tGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCgg             <  1:533463/150‑1 (MQ=255)                                                                                                                                         gtcggcgCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCGGTGAAGAc      <  1:381490‑M2/143‑1 (MQ=255)                                                                                                                                           cggcgCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCGGTGAAGACCt    <  1:851256‑M2/145‑1 (MQ=255)                                                                                                                                             gcgCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCGGTGAAGACCTGa  <  1:678957‑M2/147‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   ACAACTGGCCGACGGCACCAAGCTGGGCCTGGACGCCGCCCTGGACAAGGCCGCCGACCTGCTACGCGGCCGTACCATCGTCGGTATCGGCTCGCCACGCGCCAGCCTCGAAAGCAACTACGGCCTGCGTGAGCTGGTCGGCGCCGAGTACTTCTACTCGGGCATGGAAGCTGGCGAACTGGCCCGCGTACGCCTGGCCCTGAACGTGCTGAACAACAGCCCGCTGCCCGTGCCGACCCTGCGCGACATCGAAGACCACGACGCCGTGTTCGTGCTCGGTGAAGACCTGA  >  NC_002947/4662028‑4662317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.