New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808934 =	48 (1.520)	4 (0.130)	4/236	NT	8.9%	coding (444/1716 nt)	dsbD‑II	thiol/disulfide interchange protein 2
	?	NC_002947	4808965 =	36 (1.190)					coding (475/1716 nt)	dsbD‑II	thiol/disulfide interchange protein 2

CCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCT  >  NC_002947/4808820‑4809110                                                                                                                                                    |                                                                                                                                                  ccTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAg                                                                                                                                               >  1:749466/1‑150 (MQ=255)  cTGGGCTGGCAGGGCTGCGGCGAGGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGc                                                                                                                                              >  2:270769/1‑150 (MQ=255)  cTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGc                                                                                                                                              >  1:497466/1‑150 (MQ=255)    gggCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCt                                                                                                                                            <  1:169048/150‑1 (MQ=255)          gCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGc                                                                                                                                      >  1:852009/1‑150 (MQ=255)          gCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCAACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGc                                                                                                                                      <  2:129410/150‑1 (MQ=255)               gCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGttct                                                                                                                                 >  1:778249/1‑150 (MQ=255)                   cgcCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCgg                                                                                                                             <  1:754676/150‑1 (MQ=255)                    gcCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGc                                                                                                                            <  1:285739/150‑1 (MQ=255)                    cccagcaccagcccggcaaggatcggcagcatcggcaacgagcagggggtgaaggccagcagcaggccaaggccgaagaacgccaacaggctccaGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGa                                                                                                                                                >  2:492665‑M1/96‑130 (MQ=255)                    cccagcaccagcccggcaaggatcggcagcatcggcaacgagcagggggtgaaggccagcagcaggccaaggccgaagaacgccaacaggctccaGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGa                                                                                                                                                <  1:492665‑M1/35‑1 (MQ=255)                       gACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCtt                                                                                                                         <  2:650961/150‑1 (MQ=255)                          gCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGc                                                                                                                      <  1:235521/150‑1 (MQ=255)                              gCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGt                                                                                                                                          <  2:132807/126‑1 (MQ=255)                              gCCTGTGCTACCCGCCGCAAACCACCGCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGt                                                                                                                                          >  1:132807/1‑126 (MQ=255)                                          cgccgcAAACCACCTCGATCGACTTGGGCTGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCa                                                                                                      <  1:133520/150‑1 (MQ=255)                                           gccgcAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTg                                                                                                                        <  2:87727/131‑1 (MQ=255)                                           gccgcAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTg                                                                                                                        >  1:87727/1‑131 (MQ=255)                                              gcAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCAcccc                                                                                                  <  2:109462/150‑1 (MQ=255)                                              gcAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCAcccc                                                                                                  <  1:398839/150‑1 (MQ=255)                                                     accTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCg                                                                                           <  2:773309/150‑1 (MQ=255)                                                       cgcgattgaCTTGGGCGGCACCGTACCGCCGGCCGCCGTGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACGTCGCCTGGGGCTTTTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGTCCTTCACCCCCTGCTCggt                                                                                         <  2:18909/148‑3 (MQ=255)                                                        gcaacgagcagggggtgaaggccagcagcaggccaaggccgaagaacgccaacaggctccaggccagcggccttcagcaaggccacctggccTGGAGCCTGTTGGCGTTCTTCGGCCTTg                                                                                                                        >  1:712583‑M2/93‑120 (MQ=255)                                                        gcaacgagcagggggtgaaggccagcagcaggccaaggccgaagaacgccaacaggctccaggccagcggccttcagcaaggccacctggccTGGAGCCTGTTGGCGTTCTTCGGCCTTg                                                                                                                        <  2:712583‑M2/28‑1 (MQ=255)                                                         cgatcgaCTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGc                                                                                       <  2:852009/150‑1 (MQ=255)                                                          gatcgaCTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGcc                                                                                      >  2:656544/1‑150 (MQ=255)                                                               aCTTGGGCGGCACCGTAACGCCGTCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCGGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGAtgc                                                                                 <  2:411161/150‑1 (MQ=255)                                                                   gggCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGcc                                                                             >  1:503497/1‑150 (MQ=255)                                                                     gcggcACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGa                                                                           <  1:721941/150‑1 (MQ=255)                                                                          aCCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCtt                                                                      <  1:577462/150‑1 (MQ=255)                                                                                       caaggccgaagaacgccaacaggctccaGGCCAGGTGGCCTTGCTG‑AAGGCCGC‑TGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGc                                                                                       >  1:712583‑M1/29‑120 (MQ=255)                                                                                       caaggccgaagaacgccaacaggctccaGGCCAGGTGGCCTTGCTG‑AAGGCCGC‑TGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGc                                                                                       <  2:712583‑M1/92‑1 (MQ=255)                                                                                          ccgAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTgg                                                      <  1:187596/150‑1 (MQ=255)                                                                                          ccgAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTgg                                                      <  2:548190/150‑1 (MQ=255)                                                                                           cgAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTggg                                                     <  2:640865/150‑1 (MQ=255)                                                                                                  acgaGCGACCAGGCGCTGGCTAGC‑GGCGGA‑CAGCAAGGCCACCTGGCCTGGGGCTTGTTGGCGTTCTTCGGCCTTGGCCTGCGGCTGGCCTTCACCCCCTGCTCGTTGCGGATGCTGCCGATCCTTTCCGGGCTGGTGCTGGGCAATgtc                                              <  2:24553/147‑3 (MQ=255)                                                                                                    cAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGgcgc                                            <  2:71363/150‑1 (MQ=255)                                                                                                        gACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGt                                        <  1:94993/150‑1 (MQ=255)                                                                                                           cAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCGGGGCt                                                              >  1:687025/1‑125 (MQ=255)                                                                                                           cAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCt                                                              <  2:687025/125‑1 (MQ=255)                                                                                                            aGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGccc                                    >  2:221400/1‑150 (MQ=255)                                                                                                                 tccaggccaggtggccttgctgaaggccgctggccTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTggg                                                     >  2:492665‑M2/36‑130 (MQ=255)                                                                                                                 tccaggccaggtggccttgctgaaggccgctggccTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTggg                                                     <  1:492665‑M2/95‑1 (MQ=255)                                                                                                                       AGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGACTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCggctgg                         >  1:270769‑M1/1‑150 (MQ=255)                                                                                                                                    gCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCgg              >  2:318057/1‑150 (MQ=255)                                                                                                                                      aaGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCgggg            >  1:49280/1‑150 (MQ=255)                                                                                                                                                ggccTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCt  <  1:6837‑M2/146‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CCTGGGCTGGCAGGGCTGCGCCGACGCCGGCCTGTGCTACCCGCCGCAAACCACCTCGATCGACTTGGGCGGCACCGTAACGCCGGCCGCCGAGCAAGCCAGCGACCAGGCGCTGGCCAGC‑GGCCTT‑CAGCAAGGCCACCTGGCCTGGAGCCTGTTGGCGTTCTTCGGCCTTGGCCTGCTGCTGGCCTTCACCCCCTGCTCGTTGCCGATGCTGCCGATCCTTGCCGGGCTGGTGCTGGGCAATGGCGCCAGTGCCCGGCGCGGCTGGCTGCTGGCCGGGGTCTATGTGCT  >  NC_002947/4808820‑4809110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.