New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5698783 =	48 (1.520)	6 (0.220)	6/214	NT	14.6%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698866 =	29 (1.060)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein

CTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTA  >  NC_002947/5698719‑5699012                                                                                                                                                     |                                                                                                                                                   cTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAagag                                                                                                                                                  <  1:318374/150‑1 (MQ=255) cTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAagag                                                                                                                                                  >  2:318374/1‑150 (MQ=255)  tGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAgg                                                                                                                                                 <  1:78857/150‑1 (MQ=255)      tGAGCTGGCACAGAACGAAGACGTGTAGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCt                                                                                                                                             >  1:173612/1‑150 (MQ=255)        aGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTg                                                                                                                                           >  2:252311/1‑150 (MQ=255)           tGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAAt                                                                                                                                        <  1:252311/150‑1 (MQ=255)           tGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAAt                                                                                                                                        >  1:622334/1‑150 (MQ=255)               acaGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAAtccct                                                                                                                                    <  1:799299/150‑1 (MQ=255)                            cTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGccc                                                                                                                                              >  1:780641/1‑127 (MQ=255)                            cTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGccc                                                                                                                                              <  2:780641/127‑1 (MQ=255)                                cgcgTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAg                                                                                                                   >  1:343609/1‑150 (MQ=255)                                    ttACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCGCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTTATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgt                                                                                                               <  2:389435/150‑1 (MQ=255)                                      aCATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGc                                                                                                             <  2:622334/150‑1 (MQ=255)                                       cATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAg                                                                                                                   >  2:117412/1‑143 (MQ=255)                                       cATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAg                                                                                                                   <  1:117412/143‑1 (MQ=255)                                        aTTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCtt                                                                                                           >  1:823977/1‑150 (MQ=255)                                            tGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAAtccc                                                                                                                                     <  2:793143/120‑1 (MQ=255)                                            tGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAAtccc                                                                                                                                     >  1:793143/1‑120 (MQ=255)                                                aGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCt                                                                                                   >  2:748227/1‑150 (MQ=255)                                                 gACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTc                                                                                                  <  2:823977/150‑1 (MQ=255)                                                  aCCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAagag                                                                                                                                                  >  2:84857/1‑101 (MQ=255)                                                  aCCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAagag                                                                                                                                                  <  1:84857/101‑1 (MQ=255)                                                     ggTTTCGACGGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGCTTCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCga                                                                                              <  1:148662/150‑1 (MQ=255)                                                      gTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTTGACGCGCCACCACAACCCGTGGGCCTGTTGTGATCCGTGCGGGGGGGGGCTTTCCCGCCGAAG‑GGCCCCTTAATCCCCCCCCCCTAAGCTGGGAGCTGTGTTTCTTCACCTccccgg                                                                                             >  2:630110/1‑147 (MQ=255)                                                          cGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGAt                                                                                         <  2:694819/150‑1 (MQ=255)                                                            aCAGTTTCGCGGGCAAGACCGCTCCTGCACGCGCCACCACAACAATTGGGCGTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTc                                                                                       >  2:759159/1‑150 (MQ=255)                                                                     gcgggcaagcccgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATg                                                                               >  2:282570‑M2/81‑150 (MQ=255)                                                                             gcccgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGc                                                                                                             <  1:852010‑M2/40‑1 (MQ=255)                                                                             gcccgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGc                                                                                                             >  2:852010‑M2/73‑112 (MQ=255)                                                                             CCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcctg                                                                      <  1:821676‑M1/150‑1 (MQ=255)                                                                              cccgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcctg                                                                      >  1:464772‑M2/72‑150 (MQ=255)                                                                                            gcCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAAc                                                       <  1:630110/150‑1 (MQ=255)                                                                                                      ggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACaaa                                              <  1:282570‑M2/103‑1 (MQ=255)                                                                                                         ttGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCt                                          >  2:744484/1‑150 (MQ=255)                                                                                                             gCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCaa                                      <  2:173612/150‑1 (MQ=255)                                                                                                                    gtgATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCga                                                                                              >  2:350104/1‑87 (MQ=255)                                                                                                                    gtgATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCga                                                                                              <  1:350104/87‑1 (MQ=255)                                                                                                                       gtCCGTGCTGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATTGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGc                            >  2:405537/2‑150 (MQ=255)                                                                                                                       aTCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGc                            <  1:748227/150‑1 (MQ=255)                                                                                                                        tCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGcc                           >  2:702769/1‑150 (MQ=255)                                                                                                                             tgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCAc                       <  2:464772‑M2/126‑1 (MQ=255)                                                                                                                                     cgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCAc               <  2:343609‑M2/134‑1 (MQ=255)                                                                                                                                        gcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCa                              >  1:89458‑M2/14‑132 (MQ=255)                                                                                                                                        gcttgcccgcgaaGAGGCCCTTGAACCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCGCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCa                              <  2:89458‑M2/119‑1 (MQ=255)                                                                                                                                          ttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACGcgga          <  2:215898‑M2/139‑2 (MQ=255)                                                                                                                                          ttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACGcgga          >  1:215898‑M2/12‑149 (MQ=255)                                                                                                                                                 cgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCt   <  1:759159‑M2/146‑1 (MQ=255)                                                                                                                                                  gaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTa  >  1:573341‑M2/4‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCG‑CGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTA  >  NC_002947/5698719‑5699012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.