New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5736939	31 (0.980)	4 (0.140)	3/232	NT	11.9%	coding (563/1674 nt)	hutU	urocanate hydratase
	?	NC_002947	= 5736952	30 (1.010)					coding (550/1674 nt)	hutU	urocanate hydratase

TTGGCGATGCGTGCGAGGGCGTCGTCGAGGTCAGTGGCCTGCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATAGGTGCCCTGGACGATGCCCTGGCTGCCGATGTAGA  >  NC_002947/5736819‑5737089                                                                                                                                       |                                                                                                                                          ttGGCGATGCGTGCGAGGGCGTCGTCGAGGTCAGTGGCCTGCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGccc                                                                                                                           >  2:221333/1‑150 (MQ=255) ttGGCGATGCGTGCGAGGGCGTCGTCGAGGTCAGTGGCCTGCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAG‑CCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCa                                                                                                                          <  2:791479/150‑1 (MQ=255)           gtgcgAGGGCGTCGTCGAGGTCAGTGGCCTGCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCa                                                                                                                 <  1:221333/150‑1 (MQ=255)            tgcgAGGGCGTCGTCGAGGTCAGTGGCCTGCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCCTCGGAGGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAg                                                                                                                >  1:270762/1‑150 (MQ=255)              cgAGGGCGTCGTCGAGGTCAGTGGCCTGCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCACTGGCCGCGACCCggctggggcttgctcgctgaacatcgaa                                                                                                                >  2:31041‑M2/1‑122 (MQ=255)                       cgtcgAGGTCAGTGGCCTGCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGa                                                                                                     <  1:675240/150‑1 (MQ=255)                               tCAGTGGCCTGCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCAc                                                                                             >  2:809355/1‑150 (MQ=255)                                   tGGCCTGCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGc                                                                                         >  1:69762/1‑150 (MQ=255)                                        tGCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTc                                                                                    >  2:690053/1‑150 (MQ=255)                                         gCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCa                                                                                   <  1:342289/150‑1 (MQ=255)                                              tcgACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTc                                                                                    <  1:638786/144‑1 (MQ=255)                                              tcgACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTc                                                                                    >  2:638786/1‑144 (MQ=255)                                                 aCGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCTAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTgccg                                                                           <  2:69762/150‑1 (MQ=255)                                                         ggTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGc                                                                                                              >  2:721115/1‑107 (MQ=255)                                                         ggTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGc                                                                                                              <  1:721115/107‑1 (MQ=255)                                                           tttCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCt                                                                 <  1:805442/150‑1 (MQ=255)                                                                       aGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGTTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCtt                                                     >  1:592236/1‑150 (MQ=255)                                                                           gATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCTCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCa                                                                                   >  2:819873/1‑116 (MQ=255)                                                                           gATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCa                                                                                   <  1:819873/116‑1 (MQ=255)                                                                                       ctgGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATa                                     >  1:58665/1‑150 (MQ=255)                                                                                       ctgGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATa                                     >  1:264641/1‑150 (MQ=255)                                                                                        tgGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATAg                                    <  1:809355/150‑1 (MQ=255)                                                                                                gATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGGGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATAggagatcgg                            >  1:820701/1‑143 (MQ=255)                                                                                                gATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATAGGTGCCCTg                            >  1:529637/1‑150 (MQ=255)                                                                                                       aGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAg                                                                     >  1:710387/1‑102 (MQ=255)                                                                                                       aGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAg                                                                     <  2:710387/102‑1 (MQ=255)                                                                                                       aGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATAGGTGCCCTGGACGATg                     <  2:529637/150‑1 (MQ=255)                                                                                                                  cccAGCCA‑GGGTCGCGGCCAGtggctggggcttgctcgctgaacatcgaatgccagcagagccgtatcgacttccgcctggaaacccgctacgtcgacgagcaggccactgacctcgacgacgccctcgcacgcatcgccaagtacaccg          <  1:561529‑M2/150‑130 (MQ=255)                                                                                                                  cccAGCCA‑GGGTCGCGGCCAGtggctggggcttgctcgctgaacatcgaatgccagcagagccgtatcgacttccgcctggaaac                                                                           >  2:429503‑M2/1‑21 (MQ=255)                                                                                                                  cccAGCCA‑GGGTCGCGGCCAGtggctggggcttgctcgctgaacatcgaatgccagcagagccgtatcgacttccgcctggaaac                                                                           <  1:429503‑M2/85‑65 (MQ=255)                                                                                                                  cccAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATAGGTGCCCTGGACGATGCCCTGGCTGcc          >  1:706423/1‑150 (MQ=255)                                                                                                                  cccAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATAGGTGCCCTGGACGATGCCCTGGCTGcc          >  2:819548/1‑150 (MQ=255)                                                                                                                     agcca‑gGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATAGGTGCCCTGGACGATGCCCTGGCTGCCGAt       <  1:110636/150‑1 (MQ=255)                                                                                                                           gggTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATAGGTGCCCTGGACGATGCCCTGGCTGCCGATGTAGa  >  2:625205/1‑150 (MQ=255)                                                                                                                                       |                                                                                                                                          TTGGCGATGCGTGCGAGGGCGTCGTCGAGGTCAGTGGCCTGCTCGTCGACGTAGCGGGTTTCCAGGCGGAAGTCGATACGGCTCTGCTGGCATTCGATGTTCAGCGAGCAAGCCCCAGCCA‑GGGTCGCGGCCAGTGGCTGGGCGCCGCCCATGCCGCCCAGGCCAGCGGTGAGTACCCACTTGCCTTTCAGGCTGCCGCCGTAGTGCTGGCGACCGGCTTCGACGAAGGTTTCATAGGTGCCCTGGACGATGCCCTGGCTGCCGATGTAGA  >  NC_002947/5736819‑5737089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.