New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5742048	28 (0.880)	4 (0.130)	4/236	NT	11.7%	coding (162/597 nt)	PP_5039	hypothetical protein
	?	NC_002947	= 5742064	34 (1.130)					coding (146/597 nt)	PP_5039	hypothetical protein

CACCTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGC  >  NC_002947/5741925‑5742207                                                                                                                                            |                                                                                                                                                 caccTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAg                                                                                                                                        <  2:577390/150‑1 (MQ=255)     tGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCg                                                                                                                                   >  2:182875/1‑150 (MQ=255)         cACGCCGCGCGCCTTCGAGGGCGACCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCaa                                                                                                                               >  2:738331/1‑150 (MQ=255)          aCGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCaaa                                                                                                                              >  1:2883/1‑150 (MQ=255)            gCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCg                                                                                                                                   >  2:731200/1‑143 (MQ=255)            gCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCg                                                                                                                                   <  1:731200/143‑1 (MQ=255)                       tCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCg                                                                                                                 >  1:335092/1‑150 (MQ=255)                                cgcgGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCCAACAGCGCACGGGCGTCGGCATCg                                                                                                        <  2:652992/150‑1 (MQ=255)                                         tCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTg                                                                                               <  1:718291/150‑1 (MQ=255)                                         tCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCGGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGACGGCATCGTAATGCTTg                                                                                               >  1:725043/1‑150 (MQ=255)                                              gTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGaa                                                                                          <  1:182875/150‑1 (MQ=255)                                                 gATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACca                                                                                       >  2:113660/1‑150 (MQ=255)                                                    cATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAgcgc                                                                                                                        >  2:594867/1‑114 (MQ=255)                                                    cATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAgcgc                                                                                                                        <  1:594867/114‑1 (MQ=255)                                                     aTGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGTGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGc                                                                                   <  2:320218/150‑1 (MQ=255)                                                                cTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTCATGCTTGCCGAACCACAGCGTGCTCTtctc                                                                        <  1:807983/150‑1 (MQ=255)                                                                         cAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCAc                                                               <  2:2883/150‑1 (MQ=255)                                                                          aaaaTCAGCAGGACCAGCCAGCACTGCGGGGTTAGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACg                                                              <  2:359807/150‑1 (MQ=255)                                                                                atcagGCCCAGCCAGCCCCGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGTGTGCTCGACCAGG‑TCGCCAAACAGCGAATTGGCGTCGGCATCGTAACGCCTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTgg                                                        <  2:289624/148‑1 (MQ=255)                                                                                       ccagccagCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTgg                                                 >  2:230015/1‑150 (MQ=255)                                                                                           ccagccCTGCGGGGTTTGCTGCCCCTCGTCGACCCCACCCTCCAGGGCGTGCTCGCCCAGGATCTACCGTC‑TTTCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGcc                                             <  1:656792/150‑1 (MQ=255)                                                                                              gccCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCa                                          >  2:428146/1‑150 (MQ=255)                                                                                                ccTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGCACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAAc                                        <  2:335092/150‑1 (MQ=255)                                                                                                ccTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCAGTGcccaggc                                        <  1:113660/150‑5 (MQ=255)                                                                                                              tgcCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTcc                          >  1:765728/1‑150 (MQ=255)                                                                                                                ccACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCGCGTAAGCCATGATGTTGGCAGTGGTGCCCCAACCGAACCACCATTCCAg                        >  2:416344/1‑150 (MQ=255)                                                                                                                  aCTCTTCGAGCCCACCCGCCAGGGCGTgctcgaagagtggcagcaaaccccgcagggctggctgggcctgctgattttgctcgaccagctgccacgcatgatctaccgc                                                                >  2:292658‑M2/1‑27 (MQ=255)                                                                                                                  aCTCTTCGAGCCCACCCGCCAGGGCGTgctcgaagagtggcagcaaaccccgcagggctggctgggcctgctgattttgctcgaccagctgccacgcatgatctaccgc                                                                <  1:292658‑M2/109‑83 (MQ=255)                                                                                                                  aCTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCa                      >  1:288834/1‑150 (MQ=255)                                                                                                                    tctTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAAc                    >  2:506670/1‑150 (MQ=255)                                                                                                                           gCCCACCCGCCAGGGCGTgctcgaagagtggcagcaaaccccgcagggctggctgg                                                                                                            >  2:285891‑M2/1‑18 (MQ=255)                                                                                                                           gCCCACCCGCCAGGGCGTgctcgaagagtggcagcaaaccccgcagggctggctgg                                                                                                            <  1:285891‑M2/56‑39 (MQ=255)                                                                                                                            cccACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGc                                                                                   <  1:716915/79‑1 (MQ=255)                                                                                                                            cccACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGc                                                                                   >  2:716915/1‑79 (MQ=255)                                                                                                                             ccACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCaa           >  2:286498/1‑150 (MQ=255)                                                                                                                                  cGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGc      <  1:738331/150‑1 (MQ=255)                                                                                                                                      aGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGACCCACAGCGTGCCCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAAACACCATTCCAGCAACGGCTGCCAAGGTGCGAGc  >  1:697595/1‑150 (MQ=255)                                                                                                                                       gggCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGcccc                                           <  2:28810/108‑1 (MQ=255)                                                                                                                                       gggCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGcccc                                           >  1:28810/1‑108 (MQ=255)                                                                                                                                            |                                                                                                                                                 CACCTGGGCACGCCGGTCGCCCTCGAAGGCGCGCGGCGTGTCGCGGTAGATCATGCGTGGCAGCTGGTCGAGCAAAATCAGCAGGCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGG‑TCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGC  >  NC_002947/5741925‑5742207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.