Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 789,133 | T→C | 18.0% | L123P (CTG→CCG) | gdhA → | NADP‑dependent glutamate dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 789,133 | 0 | T | C | 18.0% | 56.0 / 4.4 | 27 | L123P (CTG→CCG) | gdhA | NADP‑dependent glutamate dehydrogenase |
Reads supporting (aligned to +/- strand): ref base T (13/9); new base C (2/3); total (15/12) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.28e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCTGTATCGCCACATCGGTGCTGACTGCGACGTACCGGCCGGTGACATCGG > NC_002947/788985‑789277 | aaGGTGCAGGTCAACCGCGGCTACAGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTg > 1:158340/1‑150 (MQ=255) cgcgGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCCGCCCATGggcagcgag < 2:664969/150‑3 (MQ=255) gCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCaacg < 2:553712/150‑3 (MQ=255) ccGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCCGCCCATGggcagcgag < 1:810285/142‑3 (MQ=255) ccGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCCGCCCATGggcagcgag > 2:810285/1‑140 (MQ=255) tCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGa < 1:512339/150‑1 (MQ=255) agagGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGTGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACt > 2:213886/1‑150 (MQ=255) aTGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACttt < 1:372357/150‑1 (MQ=255) gCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAaga > 2:456370/1‑150 (MQ=255) ccGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGc < 2:491541/150‑1 (MQ=255) ccGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCCGCCCATgg < 2:527295/106‑1 (MQ=255) ccGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCCGCCCATgg > 1:527295/1‑106 (MQ=255) aGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCAGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCg < 1:348554/150‑1 (MQ=255) aCCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGcc > 1:639306/1‑150 (MQ=255) cccGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCa < 2:376457/150‑1 (MQ=255) cccGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCa > 1:376457/1‑150 (MQ=255) gTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTc < 1:213886/150‑1 (MQ=255) aggTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCTGTATCGc < 2:163083/148‑1 (MQ=255) ttCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCTGTATCGCCACATCGGTGCTGACTGCGACGTa > 2:702119/1‑150 (MQ=255) cAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCTGTATCGCCACATCGGTGCTGACTGCGACGTAcc > 2:498147/1‑150 (MQ=255) aaGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCTGTATCGCCACATCGGTGCTGACTGCGACGTAccg > 1:325867/1‑150 (MQ=255) aaGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCTGTATCGCCACATCGGTGCTGACTGCGACGTAccg > 1:766161/1‑150 (MQ=255) aaGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCTGTATCGCCACATCGGTGCTGACTGCGACGTAccg > 1:172938/1‑150 (MQ=255) aaCTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGa > 2:402399/1‑47 (MQ=255) aaCTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGa < 1:402399/47‑1 (MQ=255) gCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCTGTATCGCCACATCGGTGCTGACTGCGACGTACCGGCCGGTGa > 2:713588/1‑150 (MQ=255) cTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCTGTATCGCCACATCGGTGCTGACTGCGACGTACCGGCCGGTGACATCgg > 1:296370/1‑150 (MQ=255) | AAGGTGCAGGTCAACCGCGGCTACCGCATTCAGATGAGCAGTGCCATTGGCCCGTACAAGGGCGGGCTGCGCTTCCACCCGTCGGTGAACCTCAGCGTGCTGAAGTTCCTGGCGTTCGAGCAGGTGTTCAAGAACTCGCTGACCTCGCTGCCCATGGGCGGCGGCAAGGGCGGCTCGGACTTTGACCCGAAAGGCAAGAGCGACGCCGAAGTGATGCGCTTCTGCCAGGCGTTCATGAGCGAGCTGTATCGCCACATCGGTGCTGACTGCGACGTACCGGCCGGTGACATCGG > NC_002947/788985‑789277 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |