| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 953,224 | T→C | 17.2% | A10A (GCT→GCC) | cyoC → | cytochrome bo terminal oxidase subunit III |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 953,224 | 0 | T | C | 17.2% | 82.0 / 9.7 | 40 | A10A (GCT→GCC) | cyoC | cytochrome bo terminal oxidase subunit III |
| Reads supporting (aligned to +/- strand): ref base T (15/18); new base C (3/4); total (18/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.70e-01 | |||||||||||
ATGGTTCCGGCCGAAGAAGTGGCGCGCATCGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCGCTCTTCGCCACCTACGCGGTGCTGTCCGGCAGTTTTGCC > NC_002947/953081‑953368 | aTGGTTCCGGCCGAAGAAGTGGCGCGCATCGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGt > 1:118535/1‑150 (MQ=255) cGGCCGAAGAAGTGGCGCGCATCGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGAcc > 2:266096/1‑150 (MQ=255) cGAAGAAGTGGCGCGCATCGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCCCATGGTCG‑TGACCATga < 1:344119/150‑2 (MQ=255) agaagTGGCGCGCATCGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCCCATGGTCG‑TGACCATGAGCa < 1:195191/150‑1 (MQ=255) aagTGGCGCGCATCGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCCCATGGTCG‑TGACCATgagc > 2:338386/1‑144 (MQ=255) aagTGGCGCGCATCGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCCCATGGTCG‑TGACCATGAGc < 1:338386/147‑1 (MQ=255) agTGGCGCGCATCGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATga < 1:625123/150‑1 (MQ=255) tccgatctCGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATgacgac < 1:161298/143‑1 (MQ=255) cgcATCGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGaccac < 1:422156/150‑1 (MQ=255) cGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGAccaccacca < 1:266096/150‑1 (MQ=255) gAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGCTTGAGCGGGTGAAATAAATGTCCAGTCAAGTAATGCACGGCGCTGCCCATGGTCA‑CGCCCCTGGGCCTGACGaccagaccgga > 2:161298/1‑143 (MQ=255) ggCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGAc < 1:633954/150‑1 (MQ=255) gAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCg > 1:660073/1‑150 (MQ=255) tATGAAAGCGCTGGTCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCa < 1:389998/150‑1 (MQ=255) aaGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATg < 2:779236/102‑1 (MQ=255) aaGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATg > 1:779236/1‑102 (MQ=255) aaGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGa > 1:672084/1‑150 (MQ=255) ccAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTgg < 2:317350/150‑1 (MQ=255) cAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCt < 2:724772/150‑1 (MQ=255) cAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCt < 2:672084/150‑1 (MQ=255) tgccGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCCCATGGTcgt < 1:361768/79‑3 (MQ=255) tgccGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCCCATGGTcgt > 2:361768/1‑77 (MQ=255) ggCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTAAAGTAAAATAATAAACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGAcc < 1:616665/150‑1 (MQ=255) cGTGTCGGAGCGGTTTAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGc < 2:21664/150‑1 (MQ=255) ttCGTTTGAGCGGTTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCCCGACTCCGGCCAGATGACCGTACTGGGCTTTTGGCTGTACCTGATGACCGACTGCATCCTGtt < 2:27901/149‑1 (MQ=255) tCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACt > 2:811350/1‑139 (MQ=255) tCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCACATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACt < 1:811350/139‑1 (MQ=255) tttGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATgg < 1:481268/65‑1 (MQ=255) tttGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGttt > 1:123344/1‑147 (MQ=255) tttGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGttt < 2:123344/147‑1 (MQ=255) tttGAGCGGGGGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATgg > 2:481268/1‑65 (MQ=255) gtgtAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCGCTCTTc > 1:88818/1‑150 (MQ=255) gtAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCGCTCTTCGc < 2:182141/150‑1 (MQ=255) tCAATGTCCAGTCAAGTAATGCACGGCGNTGCTCATGGTCA‑CGANCNTNGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCGCTCTTCGCCAcc > 1:585286/1‑150 (MQ=255) tCAATGTCCAGTCAAGTAATGCACGGCGCTGATCCTGGCAAGCCCCGTTCGACGTGGC‑AGATCCACGATTACGCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCGCTCTTCGCCAcc > 1:16109/1‑150 (MQ=255) cAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTCCTGGGCTTCTGCCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCCCCCTTTGCCAACt > 2:130/1‑150 (MQ=255) tAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCGCTCTTCGCCACCTACGCGGTGCTGTCCg < 2:660073/150‑1 (MQ=255) aCGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGCCTCGGGCCGGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCGCTCTTCGCCACCTACGCGGTGCTGTCCGTCAGtt > 2:334902/1‑150 (MQ=255) aCGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCGCTCTTCGCCACCTACGCGGTGCTGTCCGGCAGtt > 2:256821/1‑150 (MQ=255) aCGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCGCTCTTCGCCACCTACGCGGTGCTGTCCGGCAGtt > 2:759375/1‑150 (MQ=255) gctgctCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCGCTCTTCGCCACCTACGCGGTGCTGTCCGGCAGTTTTGcc < 2:585286/150‑1 (MQ=255) tgctCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGtt < 2:27903/102‑1 (MQ=255) tgctCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGtt > 1:27903/1‑102 (MQ=255) | ATGGTTCCGGCCGAAGAAGTGGCGCGCATCGAAGGCGAGCGTATGAAAGCGCTGGCCAAAGCAGGTGCTCTGCCTGCCGGCGCACGTGTCGAATCGTTTGAGCGGGTGTAATCAATGTCCAGTCAAGTAATGCACGGCGCTGCTCATGGTCA‑CGACCATGGGCATGACGACCACCACCACGACTCGGGCCAGATGACCGTACTGGGCTTCTGGCTGTACCTGATGACCGACTGCATCCTGTTTGCGTCGCTCTTCGCCACCTACGCGGTGCTGTCCGGCAGTTTTGCC > NC_002947/953081‑953368 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |