Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,429,571 | T→C | 23.8% | intergenic (+81/‑399) | mqo‑II → / → PP_1252 | malate:quinone oxidoreductase/group II intron‑encoding maturase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,429,571 | 0 | T | C | 23.8% | 32.0 / 7.5 | 21 | intergenic (+81/‑399) | mqo‑II/PP_1252 | malate:quinone oxidoreductase/group II intron‑encoding maturase |
Reads supporting (aligned to +/- strand): ref base T (5/11); new base C (2/3); total (7/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.75e-01 |
TTGAATTCGGTGGTGCGGCAAGCAAGCCGGTCGAGAGCAAGCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGG > NC_002947/1429426‑1429674 | ttGAATTCGGTGGTGCGGCAAGCAAGCCGGTCGAGAGCAAGCCTGAGAACGACATGGCGCTGTAATCGGCCGTTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTGTGGGAGCGCCTGTCGTGTTGCGTTGCGCGTAtcagc > 2:817107/1‑146 (MQ=255) ttCGGTGGTGCGGCAAGCAAGCCGGTCGAGAGCAAGCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACGCGCAAcgc < 2:167396/150‑3 (MQ=255) gcaagcaaGCCGGTCGAGAGCAAGCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTCgtgg < 1:200380/150‑1 (MQ=255) gcaagcaaGCCGGTCGAGAGCAAGCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGAGGCGCTGGTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTgtgg > 1:574362/1‑150 (MQ=37) aagcaagcCGGTCGAGAGCAAGCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTgtggtg < 1:817107/150‑1 (MQ=255) ggTCGAGAGAACGCCTGAGAACGCCATGTCGCTTGAAGCGGCCATTGTTGGCAAAGAAAGCCACGGGGGGGTCGTCGTGGCTTTTTTGTGTGCGCCAGGCTTGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTgg < 2:227670/150‑1 (MQ=18) agCAAGCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAt < 1:44686/111‑1 (MQ=255) agCAAGCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAt > 2:44686/1‑111 (MQ=255) aaGCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGa > 2:362454/1‑150 (MQ=255) aaGCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGa < 1:362454/150‑1 (MQ=255) aGCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTTCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAg < 2:276326/150‑1 (MQ=255) gCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACGCGCAAcgc < 1:577930/115‑3 (MQ=255) gCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACGCGCAAcgc > 2:577930/1‑113 (MQ=255) gACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCct < 1:664646/150‑1 (MQ=255) aCATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctc < 1:686269/150‑1 (MQ=255) tgttgtGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAgt < 2:287051/150‑1 (MQ=255) aaagaaagCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGcc > 1:280639/1‑150 (MQ=255) gaaagCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACGCGCAAc < 1:754435/70‑1 (MQ=21) gaaagCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACGCGCAAc > 2:754435/1‑70 (MQ=21) cACGGGGGAGACCTCGTGGCTTTGTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAg > 2:672830/1‑150 (MQ=255) ccccccGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAGCCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTcgcg < 1:258994/145‑1 (MQ=19) aCCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCgg < 2:574362/150‑1 (MQ=38) gCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCg > 2:182510/1‑104 (MQ=32) gCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCg < 1:182510/104‑1 (MQ=32) | TTGAATTCGGTGGTGCGGCAAGCAAGCCGGTCGAGAGCAAGCCTGAGAACGACATGGCGCTGTAATCGGCCATTGTTGTGAAAGAAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGG > NC_002947/1429426‑1429674 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |