| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,483,885 | C→G | 15.5% | intergenic (+23/‑45) | yhdW → / → yhdX | amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,483,885 | 0 | C | G | 15.5% | 68.8 / 6.0 | 31 | intergenic (+23/‑45) | yhdW/yhdX | amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base C (14/12); new base G (3/2); total (17/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01 | |||||||||||
GCAAGTGGGTAACTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATCGTCTTCGTGGTCGGCCTGG > NC_002947/1483736‑1484032 | gcaagTGGGTAACTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATc < 2:588430/150‑1 (MQ=255) tAACTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCccgccgccg > 2:130389/1‑150 (MQ=255) aCTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCa < 2:424773/150‑1 (MQ=255) ggCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTg < 1:739112/150‑1 (MQ=255) ttCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGGATGccgccgcagg < 1:638321/135‑4 (MQ=255) gtCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGGATGccgccgcagg > 2:638321/2‑132 (MQ=255) tCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATccc < 1:148524/150‑1 (MQ=255) gagaAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTa < 1:130389/150‑1 (MQ=255) gagaAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTa > 2:465758/1‑150 (MQ=255) gtGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCggg > 2:250772/2‑150 (MQ=255) ccAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCTCGCCGCCGCAGGCTGTTTGAATCCCTACTGTCCGGGGCA‑Ct > 1:394818/1‑150 (MQ=255) cAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑Ctt > 2:540171/1‑150 (MQ=255) ttGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGAGGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGT‑CGGGGCACCTTCATCCCaagtca > 2:150871/1‑150 (MQ=255) aTGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGGATGccgccgcag > 2:649146/1‑84 (MQ=255) aTGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGGATGccgccgcag < 1:649146/86‑3 (MQ=255) gtgGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTa > 2:695431/1‑94 (MQ=255) gtgGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTa < 1:695431/94‑1 (MQ=255) acaacGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGAt > 2:549801/1‑150 (MQ=255) acGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATGCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCcg > 1:507586/1‑150 (MQ=255) gggcggcATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCcgc < 1:264552/149‑1 (MQ=255) aCGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAACGGCTTGTCCCTTAACGATCCGCGTGGGCGCGCGTgg < 2:521968/150‑1 (MQ=255) gcgcCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCAGCGCGCCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCt > 1:406352/1‑150 (MQ=255) gcCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGt > 2:558694/1‑150 (MQ=255) aTGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGa < 1:549801/150‑1 (MQ=255) tGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGAACCTCACGATc > 2:393715/1‑147 (MQ=255) tGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGAACCTCACGATc < 1:393715/147‑1 (MQ=255) ccTGAGGCGGCATCCCGCCGCCGCGGGATGTGCGAATCCCTACTGGCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCCCCCCAGGGCTTGTGCCTTCACGCCGCTCGCATGTCCGCGGTTCTGTTCCAGATCCTCACGATCGTCTTCGt > 2:612000/1‑150 (MQ=255) cTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATCGTCTTCGTg < 1:250772/150‑1 (MQ=255) ggcggcATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATCATCTTCGTGGTCg < 1:150871/150‑1 (MQ=255) aTCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATCGTCTTCGTGGTCGGCCTgg > 1:588999/1‑150 (MQ=255) tCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAAc > 2:200529/1‑88 (MQ=255) tCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAAc < 1:200529/88‑1 (MQ=255) | GCAAGTGGGTAACTATGGCGAAGTGTTCGAGAAGAACCTGGGCCAGAGCACTGACTTGAAGATCGACCGTGGCATGAACGCCCTGTGGAACAACGGCGGCATCCAGTACGCGCCTCCAGTGCGCTGATGGCTGCACCCTGCGGCGGCATCCCGCCGCCGCAGGCTGTTCGAATCCCTACTGTCCGGGGCA‑CTTCATGCAAAATCAAATCGGCGCACCCAAGGGCTTGTCCCTTAACGATCCGCGTGTGCGCGCGTGGCTGTTCCAGATCCTCACGATCGTCTTCGTGGTCGGCCTGG > NC_002947/1483736‑1484032 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |