| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,915,868 | A→T | 16.3% | intergenic (+254/‑35) | fklB‑II → / → PP_1715 | FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,915,868 | 0 | A | T | 16.3% | 71.7 / 8.8 | 33 | intergenic (+254/‑35) | fklB‑II/PP_1715 | FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (19/7); new base T (2/3); total (22/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.40e-01 | |||||||||||
ATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACTGTGTAAAAAACGCCCGATCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTCGCGGTGGCGCGCAAAGGCCCGCGCCTCGGC > NC_002947/1915728‑1916016 | aTGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTGGTGTCGTGAAACGACGGTGTAAAAAACGCCCGATCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTgg > 2:611771/1‑150 (MQ=255) ttCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACTGTGTAAAAAACGCCCGATCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACATTTATTGTGGATaa < 1:602419/150‑1 (MQ=255) ttCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGGGAAACGACTGTGTAAAAAACTCCCGATCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACATTTATTGTGGATaa < 2:52217/150‑1 (MQ=255) gCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACTGTGTAAAAAACGCCCGATCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTAACAAGGTTACCCACAATAAAGGTGGATAACCTTTTc > 2:7567/1‑150 (MQ=255) aTCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACTGTGTAAAAAACGCCCGATCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCTCTGTACACAAGGTTATCCACAATAAATGTGGATAACCTTTTCctct > 2:582778/1‑150 (MQ=255) gcgcCGCAGGTAGTCATGGCGTGAAACGACTGTGTAAAAAACGCCCGATCTGACCGGGCGCCTTGTCTGGCAGGAACCTGGGGGCGGAAACGTCGCCCTGTTCGCAAGGTTATCCAGAGAAAATGTGGATAACCTTTTCCTCTCGGAGGc > 1:729645/1‑150 (MQ=255) gcaGTTATGGCGTGAGACGGCTGTGTAAAAAACGCCCGATCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAgc > 2:33340/3‑150 (MQ=255) aTGGCGTGAAACGACTGTGTAAAAAACGCCCGATCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCAccc > 2:561885/1‑150 (MQ=255) gTGAAACGACTGTGTAAAAAACGCCCGATCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGaa < 1:7567/150‑1 (MQ=255) cccGATCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTgg > 1:625131/1‑150 (MQ=255) tCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAg > 2:80656/1‑150 (MQ=255) cTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATACCCTTTTTCTCTCGGAGGCTCCATGAGCGCACCCTGGACTTTTGCCCGTTTCCTGCCATTGGCCGAgc < 1:582778/150‑1 (MQ=255) cccTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCCCCTACATATAGATGATAATTGTGGGGTTCCTTTTCCTCTCGGAGGCTCCATGAGCTCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAg > 1:233296/1‑150 (MQ=255) ttGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCAt > 1:231865/1‑93 (MQ=255) ttGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCAt < 2:231865/93‑1 (MQ=255) ttGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGACTGCTCAGCcg > 2:414124/1‑150 (MQ=255) tGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCcgc < 2:625131/150‑1 (MQ=255) gcaCCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCGGCCGCGGTCGTTTGc > 2:596159/1‑150 (MQ=255) gcaCCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGc > 1:781987/1‑150 (MQ=255) gcaCCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGc < 1:611771/150‑1 (MQ=255) ggCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCttgt < 1:33340/150‑1 (MQ=255) ggAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTtgttgt > 1:806435/1‑150 (MQ=255) gTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTcgcg > 2:571902/1‑149 (MQ=255) gTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTcgcg < 1:571902/149‑1 (MQ=255) gTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTCGCgg > 1:343788/1‑150 (MQ=255) gTCGCCCTGTTCACAAGGTTATCCACAACAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTCGCgg > 1:203698/1‑150 (MQ=255) acaAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTCGCGGTGGCGCGCAAAg > 1:577521/1‑150 (MQ=255) aaaaGGTTATCCACATTTATTGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTCGCGGTGGCGCGCAAAg > 1:698593/3‑150 (MQ=255) aaaGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTCGCGGTGGCGCGCAAAgg > 1:803320/2‑150 (MQ=255) aaGGTTATCCACACTAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTCGCGGTGGCGCGCAAAGGc < 1:414124/150‑1 (MQ=255) gTTATCCACATTTATTGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGccaa < 1:786399/105‑3 (MQ=39) gTTATCCACATTTATTGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGccaa > 2:786399/1‑103 (MQ=39) gTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTCGCGGTGGCGCGCAAAGGCCcg > 2:554715/1‑150 (MQ=255) aaTAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTCGCGGTGGCGCGCAAAGGCCCGCGCCTCGGc > 2:230745/1‑150 (MQ=255) aaTAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGACAACCGGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTCGCGGTGGCGCGCAAAGGCCCGCGCCTCGGc > 1:692968/1‑150 (MQ=255) | ATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACTGTGTAAAAAACGCCCGATCTGACCGGGCCCCTTGCCTGGCAGGCACCTGGGGGCGGAAACGTCGCCCTGTTCACAAGGTTATCCACAATAAATGTGGATAACCTTTTCCTCTCGGAGGCTCCATGAGCGCACCCTGGAATTTTGCCCGTTTCCTGCCATTGGCCGAGCGCCTGCTCAGCCGCGGTCGTTTGCCGGCCTTGTTGTTCGCGGTGGCGCGCAAAGGCCCGCGCCTCGGC > NC_002947/1915728‑1916016 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |