| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,989,188 | G→C | 10.3% | G132A (GGC→GCC) | PP_1780 → | mannosyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,989,188 | 0 | G | C | 10.3% | 115.7 / 4.3 | 39 | G132A (GGC→GCC) | PP_1780 | mannosyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (18/17); new base C (2/2); total (20/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
CCGTTGAAAATGCCGACGCCGTTGCCAAGCTTAAATCGTTGGCCGACGCCAGCCAGGTGCTGGTGTCCGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGCCTATCCCCAACCTGCTACTGAGCTTTTTGGCGGAATACGAAGGCTTTGGTCGTAGCAA > NC_002947/1989041‑1989332 | ccGTTGAAAATGCCGACGCCGTTGCCAAGCTTAAATCGTTGGCCGACGCCAGCCAGGTGCTGGTGTCCGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCcggcg > 1:168416/1‑150 (MQ=255) aTGCCGACGCCGTTGCCAAGCTTAAATCGTTGGCCGACGCCAGCCAGGTGCTGGTGTCCGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGa > 1:366448/1‑150 (MQ=255) tGCCGACGCCGTTGCCAAGCTTAAATCGTTGGCCGACGCCAGCCAGGTGCTGGTGTCCGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGAt > 1:91532/1‑150 (MQ=255) ccGACGCCGTTGCCAAGCTTAAATCGTTGGCCGACGCCAGCCAGGTGCTGGTGTCCGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATAc > 1:748716/1‑150 (MQ=255) aaGCTTAAATCGTTGGCCGACGCCAGCCAGGTGCTGGTGTCCGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAAc > 1:262816/1‑150 (MQ=255) aaGCTTAAATCGTTGGCCGACGCCAGCCAGGTGCTGGTGTCCGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAAc < 2:366448/150‑1 (MQ=255) tGGCCGACGCCAGCCAGGTGCTGGTGTCCGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCa < 1:271232/150‑1 (MQ=255) aCGCCAGCCAGGTGCTGGTGTCCGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCAtggtgg < 1:476797/150‑1 (MQ=255) cGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGa < 2:91532/150‑1 (MQ=255) cGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGa > 2:523062/1‑150 (MQ=255) cGGGTTCCACATTGCCGAACATGTCCCGTTCACGGTTTTGCAACAGCTGGGAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGa > 1:181465/1‑150 (MQ=255) gggTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTATGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGAc > 2:561921/1‑150 (MQ=255) ttCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCAtggt > 1:5405/1‑122 (MQ=255) ttCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCAtggt < 2:5405/122‑1 (MQ=255) cacaTTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGc < 2:513479/150‑1 (MQ=255) cGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCAt < 1:595750/145‑1 (MQ=255) cGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCAt > 2:595750/1‑145 (MQ=255) aaCATGTTCTGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGc < 1:570484/150‑1 (MQ=255) cATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGCCt < 1:843666/150‑1 (MQ=255) ccGTTCCCGGTTTTGCAACAGCTGGTAGGGCCGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCAtggtgg < 1:233695/103‑1 (MQ=255) ccGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCAtggtgg > 2:233695/1‑103 (MQ=255) cGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGCCGGgcttga < 1:425551/64‑4 (MQ=255) cGTTCCCGGGTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGCCGGgcttga > 2:425551/1‑61 (MQ=255) gTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCa < 1:674941/132‑1 (MQ=255) gTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCa > 2:674941/1‑132 (MQ=255) cGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGCCTATCCCCAACCTGc > 1:206269/1‑150 (MQ=255) ttGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGCCTATCCCCAACCTGCTACTg > 2:621476/1‑150 (MQ=255) gCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGCCTATCCCCAACCTGCTACTGAg < 2:748716/150‑1 (MQ=255) aaCAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAAc < 2:480297/77‑1 (MQ=255) aaCAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAAc > 1:480297/1‑77 (MQ=255) aaCAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGCCTATCCCCAACCTTCTACTGAGCt > 1:346498/1‑150 (MQ=255) cAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGc < 1:32698/112‑1 (MQ=255) cAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGc > 2:32698/1‑112 (MQ=255) gcTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGCCTATCCCCAACCTGCTACTGAGCTTTTTGGCGGAATACGAAgg < 2:513478/150‑1 (MQ=255) agTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGCCTATCCCCAACCTGCTACTAAGCTTTTTGGCGGAATACGAAGGCTTTgg < 2:206269/150‑1 (MQ=255) gcaGCCCGCCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCAt > 2:394633/3‑51 (MQ=255) gcaGCCCGCAGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCAt < 1:394633/49‑1 (MQ=255) aaGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAg < 1:79229/93‑1 (MQ=255) aaGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAg > 2:79229/1‑93 (MQ=255) gCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGCCTATCCCCAACCTGCTACTGAGCTTTTTGGCGGAATACGAAGGCTTTGGTCGTAGCaa > 1:396886/1‑150 (MQ=255) | CCGTTGAAAATGCCGACGCCGTTGCCAAGCTTAAATCGTTGGCCGACGCCAGCCAGGTGCTGGTGTCCGGGTTCCACATTGCCGAACATGTCCCGTTCCCGGTTTTGCAACAGCTGGTAGGGCAGGCGCTTAGAGTACTCAAGCCCGGCGGGCTGCTGATACTGGAAACCCCCAACGCCGAAAACCTCATGGTGGGGACCAACAGCTTTTACCTCGACCCCAGCCATGAAAAGCCTATCCCCAACCTGCTACTGAGCTTTTTGGCGGAATACGAAGGCTTTGGTCGTAGCAA > NC_002947/1989041‑1989332 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |