| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,003,070 | G→C | 10.2% | V990L (GTG→CTG) | PP_1786 → | glycosyl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,003,070 | 0 | G | C | 10.2% | 135.7 / 4.9 | 47 | V990L (GTG→CTG) | PP_1786 | glycosyl transferase |
| Reads supporting (aligned to +/- strand): ref base G (21/21); new base C (3/2); total (24/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAGCTAATGGCGTCTCCAGTGATATTCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTAAGCCAGAAAGGAATCGTAGACCTTTAT > NC_002947/2002945‑2003213 | tAGCTAATGGCGTCTCCAGTGATATTCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAAcc < 1:172759/150‑1 (MQ=255) aTGGCGTCTCCAGTGATATTCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGc < 2:21426/123‑1 (MQ=255) aTGGCGTCTCCAGTGATATTCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGc > 1:21426/1‑123 (MQ=255) tGGCGTCTCCAGTGATATTCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAAc < 2:180345/142‑1 (MQ=255) tGGCGTCTCCAGTGATATTCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTGCAGAGTCAGCCTGAGAAc > 1:180345/1‑142 (MQ=255) tctcCAGTGATATTCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTATATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCaga > 2:842991/1‑123 (MQ=255) tctcCAGTGATATTCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTATATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCaga < 1:842991/123‑1 (MQ=255) aGTGATATTCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGGATCATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGAttgtt > 2:312625/1‑150 (MQ=255) ttCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCAtt > 1:832914/1‑150 (MQ=255) tCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTc < 1:748734/150‑1 (MQ=255) gTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCaa < 2:575823/150‑1 (MQ=255) aGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAg > 2:341391/1‑90 (MQ=255) aGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAg < 1:341391/90‑1 (MQ=255) aGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCa < 1:179717/103‑1 (MQ=255) aGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCa > 2:179717/1‑103 (MQ=255) gAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAggg < 1:602641/150‑1 (MQ=255) ctctTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATCATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAAca < 1:312625/150‑1 (MQ=255) acCAAACGGGTTGTATGCGGGCATAACGGCGGAATGCCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCCCTGCTTCAGAGTCAGCCTGAGAAACTTGAGTCTTTGATTGTTGACCATTCAAAGGAAGAGGGATATGAACATCATtct > 1:747540/1‑150 (MQ=255) cAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCa > 1:295309/1‑150 (MQ=255) aaaCGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGt > 2:833530/1‑81 (MQ=255) aaaCGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGt < 1:833530/81‑1 (MQ=255) gTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTggggg > 2:536693/1‑150 (MQ=255) tATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAg > 2:344773/1‑150 (MQ=255) tGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGAc > 2:474162/1‑102 (MQ=255) tGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGAc < 1:474162/102‑1 (MQ=255) atatCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAACGTGGCAGTgg > 2:48590/1‑149 (MQ=255) atCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCAATAAACGGAATAGGGGAATGAACATCATTCGCAGTGGGGGACAGTGCCGGTGAcc > 2:663645/1‑150 (MQ=255) tCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTcgc < 2:832914/150‑1 (MQ=255) tCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTcgc < 2:295309/150‑1 (MQ=255) gAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTa < 1:536693/150‑1 (MQ=255) caAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTAAGCCa > 1:422547/1‑150 (MQ=255) caAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTAAGCCa < 1:344773/150‑1 (MQ=255) tattatCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGAtt < 2:146257/60‑1 (MQ=255) tattatCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGAtt > 1:146257/1‑60 (MQ=255) tattatCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTAAGCCAGAAAGGa > 2:360480/1‑150 (MQ=255) tGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTAAGCCAGAAAGGAATCGTAg > 1:737595/1‑150 (MQ=255) ttAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTAAGCCAGAAAGGa > 2:299224/1‑140 (MQ=255) ttAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTAAGCCAGAAAGGa < 1:299224/140‑1 (MQ=255) tctgAAGCACTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAAcatca < 1:621744/80‑1 (MQ=255) tctgAAGCACTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAAcatca > 2:621744/4‑83 (MQ=255) tctgAAGCACTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATc > 1:312671/4‑117 (MQ=255) tctgAAGCACTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATc < 2:312671/114‑1 (MQ=255) ggAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGt > 2:740871/1‑89 (MQ=255) ggAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGt < 1:740871/89‑1 (MQ=255) gAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTgg > 2:358298/1‑90 (MQ=255) gAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTgg < 1:358298/90‑1 (MQ=255) gAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTAAGCCAGAAAGGAATCGTGGACCTTTAt < 2:422547/150‑1 (MQ=255) aGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCg > 2:431917/1‑110 (MQ=255) aGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCg < 1:431917/110‑1 (MQ=255) gTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTAAGCCAGAAAGGAATCGTa < 2:261562/135‑1 (MQ=255) gTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTAAGCCAGAAAGGAATCGTa > 1:261562/1‑135 (MQ=255) | TAGCTAATGGCGTCTCCAGTGATATTCCGTGGACGCAGAAAGATACCTCTTACACCAAACGGGTTGTATGCGGGCATATCGGCGGAATGTCGGAGCACAAGGGGTATTATCTGCTTAAGGAAGCAGTGCTTCAGAGTCAGCCTGAGAACCTTGAGTTTTTGATTGTTGACCATTCCAAGGAAGAGGGGTATGAACATCATTCTCAGTGGGGGAAAGTGCCAGTGACCTTTATCGGTCGCGTAAGCCAGAAAGGAATCGTAGACCTTTAT > NC_002947/2002945‑2003213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |