| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,081,155 | G→T | 11.1% | intergenic (+30/+85) | efp → / ← ohr | elongation factor P/organic hydroperoxide resistance protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,081,155 | 0 | G | T | 11.1% | 93.5 / 3.8 | 36 | intergenic (+30/+85) | efp/ohr | elongation factor P/organic hydroperoxide resistance protein |
| Reads supporting (aligned to +/- strand): ref base G (15/17); new base T (2/2); total (17/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.99e-01 | |||||||||||
TGCCAAGCTGGCGAACGGTACCGAGATCTCGGTTGCCGACTTCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTGCAGGCGCACATCCACATTACCGCGTGTGGCATTGGAGTACGGGCA > NC_002947/2081014‑2081299 | tGCCAAGCTGGCGAGCGGTACCGAGATCTCGGTTGCCGACTTCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCgg < 1:333216/150‑1 (MQ=255)tGCCAAGCTGGCGAACGGTACCGAGATCTCGGTTGCCGACTTCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCgg < 2:528885/150‑1 (MQ=255) aaGCTGGCGAACGGTACCGAGATCTCGGTTGCCGACTTCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGttt < 1:7075/150‑1 (MQ=255) cGAACGGTACCGAGATCTCGGTTGCCGACTTCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCTTGCGCCGGGTTTTTtgcgt < 2:161239/150‑4 (MQ=255) gAACGGTACCGAGATCTCGGTTGCCGACTTCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGcc > 2:575096/1‑150 (MQ=255) ccGAGATCTCGGTTGCCGACTTCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGCTTTTTGTGCCTGTGtttt > 2:831584/1‑150 (MQ=255) cGAGATCTCGGTTGCCGACTTCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCTTGCGCCGGGtttttt < 1:499899/136‑1 (MQ=255) cGAGATCTCGGTTGCCGACTTCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCTTGCGCCGGGtttttt > 2:499899/1‑136 (MQ=255) ctcGGTTGCCGACGTCATCCAGGTCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTTAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATc < 1:376132/150‑1 (MQ=255) cGACTTCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGcgcg > 2:44705/1‑150 (MQ=255) ttCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCt > 2:584496/1‑150 (MQ=255) aTCCAGATCGACGAGTGGATCGACATCGCCACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAGTCCTCAGCGCGTGCTtgt < 1:627406/150‑1 (MQ=255) ccAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGc < 2:405267/150‑1 (MQ=255) cgaGTGGGTCGACATCGACCCTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAgg < 1:474275/150‑1 (MQ=255) atcgacatcgacACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGc > 1:463765/1‑100 (MQ=255) atcgacatcgacACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGc < 2:463765/100‑1 (MQ=255) tcgacatcgacaCTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATcgcg > 1:712520/1‑150 (MQ=255) atcgacaCTCGCGACAACAGCTTCAAAGACCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGc > 1:238827/1‑150 (MQ=255) cgcgACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGcc < 1:608431/150‑1 (MQ=255) ggACAATAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTTCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCtt > 2:646885/2‑150 (MQ=255) aacaGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTATTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGGCTTAGAc > 1:277804/1‑150 (MQ=255) gaccGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTGCAg < 2:238827/148‑1 (MQ=255) cccAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTGCAGGCGcac > 2:669821/2‑150 (MQ=255) aagaagTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTg < 2:790429/119‑1 (MQ=255) aagaagTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTg > 1:790429/1‑119 (MQ=255) agaagTAATGCTTCTTGCGAGACGCAAAAAACCAGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCATGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTGCAGGCGCACATcc > 2:403722/1‑150 (MQ=255) tcttGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTATGCTCCCACAGGGGATCGCGCAACCTTTGGCGCCTTAGGCGGTTACGTGCAGGCGCACATCCACATTACCGCgt < 1:575096/150‑1 (MQ=255) aggcacAAAAAACCCGGCTTGCGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTGCAGGCGCACATCCACATTACCGCGTGTGGCAt > 2:722182/6‑150 (MQ=255) aCGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCACAATCCTCAGCGCGTGCTTGTGCTCCCACAGGTGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTGCAGGCGCACATCCACATTGCCGCGTGTGGCATTg < 1:584496/150‑1 (MQ=255) gCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTGCAGGCGCACATCCACATTACCGCGTGTGGCATTGGa > 2:828184/1‑150 (MQ=255) ccccGGCGCAAGCCGTGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCCCCCATGGGGGATCGCGACCGCCTTTGCGCCTAAGACGGTTACGTGCAGGCGCACATCCACATTACCGCGTGTGGCATTGGAGTACggg < 1:831584/149‑1 (MQ=255) aCCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTGCAGGCGCACATCCACATTACCGCGTGTGGCATTGGAGTACggg < 1:51880/150‑1 (MQ=255) ccGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTg > 2:156455/1‑105 (MQ=255) ccGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTg < 1:156455/105‑1 (MQ=255) ccGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTGCAGGCGCACATCCACATTACCGCGTGTGGCATTGGAGTACGGGca < 1:669821/150‑1 (MQ=255) ccGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTGCAGGCGCACATCCACATTACCGCGTGTGGCATTGGAGTACGGGca > 2:168793/1‑150 (MQ=255) | TGCCAAGCTGGCGAACGGTACCGAGATCTCGGTTGCCGACTTCATCCAGATCGACGAGTGGATCGACATCGACACTCGCGACAACAGCTTCAAAGGCCGCTCCAAGAAGTAATGCTTCTTGCGAGACGCAAAAAACCCGGCGCAAGCCGGGTTTTTTGTGCCTGTGTTTTCCCAATCCTCAGCGCGTGCTTGTGCTCCCACAGGGGATCGCGCAAGCCTTTGCGCCTTAGACGGTTACGTGCAGGCGCACATCCACATTACCGCGTGTGGCATTGGAGTACGGGCA > NC_002947/2081014‑2081299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |