Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,271,710 | A→G | 28.6% | intergenic (+51/‑49) | PP_t32 → / → PP_t33 | tRNA‑Asp/tRNA‑Asp |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,271,710 | 0 | A | G | 28.6% | 30.1 / 10.8 | 21 | intergenic (+51/‑49) | PP_t32/PP_t33 | tRNA‑Asp/tRNA‑Asp |
Reads supporting (aligned to +/- strand): ref base A (6/9); new base G (3/3); total (9/12) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.44e-01 |
CAGAGAGGAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTC > NC_002947/2271565‑2271840 | cAGAGAGGAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGcc > 2:143243/1‑150 (MQ=255) cGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGa > 2:479619/1‑149 (MQ=255) cGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGa < 1:479619/149‑1 (MQ=255) cGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGAt < 1:705267/150‑1 (MQ=255) cTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCa < 1:143243/150‑1 (MQ=255) tCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGCTCCAAGTTTACCTCGAGCGCAAga > 2:184382/1‑149 (MQ=25) tCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGc < 1:504153/150‑1 (MQ=255) aaTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGa < 2:159965/150‑1 (MQ=255) tCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTa < 1:184382/150‑1 (MQ=255) cGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGtt < 1:628183/150‑1 (MQ=255) ccGTCCGCTGCGCCATTTTTCAGTAAAAGATGGGAGCCTGGCACCGGTCTAACGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGGAGCAGTAGTTCAGTCGGTTAGAATACCGGCATGt > 1:121162/1‑150 (MQ=37) gATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCgg > 1:388101/1‑130 (MQ=255) gATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCgg < 2:388101/130‑1 (MQ=255) ggTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGa < 1:117890/128‑1 (MQ=255) ggTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGa > 2:117890/1‑128 (MQ=255) cccaAGGCATGTGCCTTGTGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTc > 1:320811/3‑142 (MQ=14) cccaAGGCATGTGCCTTGTGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTc < 2:320811/140‑1 (MQ=14) cccaAGGCATGTGCCTTG‑TGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTccc > 1:277197/3‑123 (MQ=17) cccaAGGCATGTGCCTTG‑TGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTccc < 2:277197/121‑1 (MQ=17) cccaAGGCATGTGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTgc > 2:137394/3‑132 (MQ=255) cccaAGGCATGTGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTgc < 1:137394/130‑1 (MQ=255) | CAGAGAGGAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTC > NC_002947/2271565‑2271840 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |