Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,395,630 | G→C | 12.3% | intergenic (‑195/+48) | dacB ← / ← PP_2099 | D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,395,630 | 0 | G | C | 12.3% | 137.5 / 11.6 | 49 | intergenic (‑195/+48) | dacB/PP_2099 | D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (22/21); new base C (2/4); total (24/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.67e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.95e-01 |
GAGTGAATACCCTGCGGCGAGGGAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCGATCTTGGTCAGTTCGCTGCGGCCTTTGAGCCAGGCTTCAA > NC_002947/2395481‑2395778 | gAGTGAATACCCTGCGGCGAGGGAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATg > 1:251227/1‑150 (MQ=255) gTGAATACCCTGCGGCGAGGGAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATggg < 2:54223/150‑1 (MQ=255) aaTACCCTGCGGCGAGGGAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACGGTACGCATTATGCCCCAAGCGCAGCCGCCATGCGTCGCGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCCCCCCAGTCGGGTg < 1:843977/150‑1 (MQ=255) aCCCTGCGGCGAGGGAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCCATTCGGGTGGcc < 1:598264/150‑1 (MQ=255) ccTGCGGCGAGGGAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCCTCTCCAATAAAAAGGCCACCCCATTCGGGTGGCCtt < 1:202991/150‑1 (MQ=255) ccTGCGGCGAGGGAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCTCCAATAAAAAGGCCACCCCATTCGGGTGGCCtt > 2:202991/1‑150 (MQ=255) tGCGGCGAGGGAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCtttt < 2:656424/150‑1 (MQ=255) gAGGGAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCaa < 1:509933/150‑1 (MQ=255) gAGGGAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCCATTCGGGTGGCCtttttattgg < 1:645110/150‑7 (MQ=255) gggAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATc > 2:744438/1‑150 (MQ=255) ggAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCa > 2:770874/1‑150 (MQ=255) aGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCtt > 2:344959/1‑150 (MQ=255) gggCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCttt > 1:54489/1‑150 (MQ=255) gCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCa > 2:31565/1‑150 (MQ=255) tttGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGCTGCGTCATTCCCCACGGAAAACGATCGCCTATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGc < 1:744438/150‑1 (MQ=255) tGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGccc < 2:54489/150‑1 (MQ=255) ggggCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGAGAGCGGTTGGCAGCAATCAACCTTTCAGCCCg > 1:641444/1‑150 (MQ=255) tAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑a > 2:742880/1‑150 (MQ=255) agagATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCt < 2:704486/146‑1 (MQ=255) agagATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCt > 1:704486/1‑146 (MQ=255) atgatgTCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTa > 1:676159/1‑150 (MQ=255) gCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTc > 1:836825/1‑150 (MQ=255) ccACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAACCAAACTTTAAGACCGAAGCGT‑ACGAATAGCACGCAGc > 2:398837/1‑150 (MQ=255) acgTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCttgt < 1:742880/150‑1 (MQ=255) acgTAAACAGTACGCATTATGCCCCAAGAGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTGAGCCACAATCTG‑ACAAGTATCACTCAGCCttgt < 1:627371/150‑1 (MQ=255) tAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGa < 2:251227/150‑1 (MQ=255) aaCAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATa > 1:783883/1‑150 (MQ=255) cAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAgg < 1:42226/150‑1 (MQ=255) aGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGc < 2:133340/150‑1 (MQ=255) tACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCtt > 2:699772/1‑150 (MQ=255) cATTATGGCCCAAGCCCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGACAATAAAAAGGCCACCCGAATGGGGTGGCCGTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTcc < 2:87602/150‑1 (MQ=255) ttATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCgg < 2:783883/150‑1 (MQ=255) ccAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAg < 1:508023/150‑1 (MQ=255) aGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCGGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCa < 1:770874/150‑1 (MQ=255) cgcAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATc < 1:398837/150‑1 (MQ=255) tGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTATGTGG‑ATCCGAGCAGCGGGc < 2:676159/150‑1 (MQ=255) tCACGTTCCACGGAAAAGCATCGCCAATAAAAAGGGCACCCGAATGAGGTGACCTTTTCAGCAAACAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGAGAGGCTTTTCCGGCTACCAGACATCC‑AGCAGTGGGCTGAc > 2:361380/1‑150 (MQ=255) gTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCg > 2:799808/1‑150 (MQ=255) gTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCACGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCg > 2:332987/1‑150 (MQ=255) ttCGACGGAAAAGCATCGCCAATAAAAAGGCAACCCGAACGGGGACGACTTTTAAGCAACCCACCATTGAGCCC‑AAACTGCACAGGTGTCACTCAGCCTTGTGCATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGCCTTCgg > 2:313251/1‑149 (MQ=255) cGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑TCAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCGATc < 1:699772/150‑1 (MQ=255) gACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATc > 2:194867/1‑127 (MQ=255) gACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATc < 1:194867/127‑1 (MQ=255) cGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCGATCTTg < 2:836825/150‑1 (MQ=255) ggAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCGATCTTgg > 1:377744/1‑150 (MQ=255) ccAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCGATCTTGGTCAGTTCGCTGc > 2:572714/1‑150 (MQ=255) aTAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCGATCTTGGTCAGTTCGCTGCGGc > 1:144527/1‑150 (MQ=255) aaaGGCCACCCCATTCGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACAAGGCATCC‑AGCAGGGGGTAGACTGCGGTCTTGGGCATTGCTCTGCGGCCttt > 2:8035/1‑150 (MQ=255) aCCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCGATCTTg < 1:268073/123‑1 (MQ=255) aCCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCGATCTTg > 2:268073/1‑123 (MQ=255) tGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCGATCTTGGTCAGTTCGCTGCGGCCTTTGAGCCAGGCTTCaa < 1:572714/150‑1 (MQ=255) | GAGTGAATACCCTGCGGCGAGGGAAAAGGGCTTTGGGGCTGTAAGAGATGATGGCCCCACGACGTAAACAGTACGCATTATGCCCCAAGCGCAGCCGCGATGCGTCACGTTCGACGGAAAAGCATCGCCAATAAAAAGGCCACCCGAATGGGGTGGCCTTTTCAGCAATCAACCTTTCAGCCCGAAGCTG‑ACAAGTATCACTCAGCCTTGTTGATAGGCTTTTCCGGGTACCAGGCATCC‑AGCAGCGGGCTGACTTCGATCTTGGTCAGTTCGCTGCGGCCTTTGAGCCAGGCTTCAA > NC_002947/2395481‑2395778 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |