Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,438,446 | C→T | 8.5% | L441L (CTC→CTT) | fadB → | enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,438,446 | 0 | C | T | 8.5% | 124.6 / 3.3 | 47 | L441L (CTC→CTT) | fadB | enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
Reads supporting (aligned to +/- strand): ref base C (21/22); new base T (2/2); total (23/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.19e-01 |
CAATGTCGACATCGTCGTCGAGGCTGTGGTCGAGAACCCGAAGGTCAAGCAAGCGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGCCAAGAAAATGGGCAAGAACCCGA > NC_002947/2438299‑2438591 | cAATGTCGACATCGTCGTCGAGGCTGTGGTCGAGAACCCGAAGGTCAAGCAAGCGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCaa > 1:572307/1‑150 (MQ=255) gTCGACATCGTCGTCGAGGCTGTGGTCGAGAACCCGAAGGTCAAGCAAGCGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAgcgc > 1:432361/1‑150 (MQ=255) tCGACATCGTCGTCGAGGCTGTGGTCGAGAACCCGAAGGTCAAGCAAGCGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGcc < 2:572307/150‑1 (MQ=255) tcgAGGCTGTGGTCGAGAACCCGAAGGTCAAGCAAGCGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTtcg > 1:313255/1‑150 (MQ=255) tCGAGAACCCGAAGGTCAAGCAAGCGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGcc < 2:838121/126‑1 (MQ=255) tCGAGAACCCGAAGGTCAAGCAAGCGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGcc > 1:838121/1‑126 (MQ=255) tCGAGAACCCGAAGGTCAAGCAAGCGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCAct > 2:331301/1‑150 (MQ=255) gagaACCCGAAGGTCAAGCAAGCGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCActtc > 1:684194/1‑150 (MQ=255) gAAGGTCAAGCAAGCGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAAccc > 1:181804/1‑150 (MQ=255) gcaagcGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTTGAGCGccttg < 2:761906/110‑4 (MQ=255) gcaagcGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTTGAGCGccttg < 2:761907/110‑4 (MQ=255) gcaagcGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTTGAGCGccttg > 1:761907/1‑107 (MQ=255) gcaagcGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTTGAGCGccttg > 1:761906/1‑107 (MQ=255) gcaagcGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACat > 1:440702/1‑150 (MQ=255) gcGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACatgatg > 1:532941/1‑150 (MQ=255) tGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTgg > 1:486055/1‑150 (MQ=255) ggAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGa > 2:530123/1‑150 (MQ=255) gAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAGACTGGTGCACATGATGCCGCTGGTTGaa < 1:331310/150‑1 (MQ=255) gAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATc > 1:642479/1‑150 (MQ=255) gAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGaa < 1:547138/150‑1 (MQ=255) ggACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTc < 1:331301/150‑1 (MQ=255) gATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGGGAAGTCCAGTGACGt > 1:686943/1‑150 (MQ=255) tCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTgg < 1:530123/150‑1 (MQ=255) gCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTc < 1:88391/150‑1 (MQ=255) acCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGca > 1:801176/1‑86 (MQ=255) acCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGca < 2:801176/86‑1 (MQ=255) ccTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTAGGCATGCACTTACTCACTCCTGTGCATATTATGCCGCTGGTTCGTGTGAGCCGTGTCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCg < 2:313255/150‑1 (MQ=255) ctctACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGcca > 2:589036/1‑143 (MQ=255) ctctACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGcca < 1:589036/143‑1 (MQ=255) ctctACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGt > 1:221739/1‑150 (MQ=255) ctctACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGACCGccacgtcact < 2:486055/150‑7 (MQ=255) tACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCAGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGc < 2:532941/150‑1 (MQ=255) tctcCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACg < 1:425584/150‑1 (MQ=255) ctcAATCTACCTCCTTGCCAATGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGc < 2:280317/150‑1 (MQ=255) cATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGCCaa > 2:518805/1‑150 (MQ=255) cATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTACTAAAACCCGGTGCACTGCATGCTTGTTGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGCCaa > 1:104708/1‑150 (MQ=255) aTCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGCCAAg > 1:411859/1‑150 (MQ=255) aaCCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAg < 2:264975/88‑1 (MQ=255) aaCCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAg > 1:264975/1‑88 (MQ=255) ccTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGCCAAGAAAAt < 2:181804/150‑1 (MQ=255) gctgGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGCCAAGAAAATggg < 2:432361/150‑1 (MQ=255) gctgGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGCCAAGAAAATggg < 1:518805/150‑1 (MQ=255) gCCAAGGCGCTCAAGCGCCCGAAAAACCTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGCCAAGAAAATGGGCAAg < 1:357653/150‑1 (MQ=255) cAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAg < 2:590978/77‑1 (MQ=255) cAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAg > 1:590978/1‑77 (MQ=255) aGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGCCAAGAAAATGGGCAAGAAcc < 2:684194/150‑1 (MQ=255) cgcTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGCCAAGAAAATGGGCAAGAACCCGa < 1:137734/150‑1 (MQ=255) | CAATGTCGACATCGTCGTCGAGGCTGTGGTCGAGAACCCGAAGGTCAAGCAAGCGGTACTGGCGGAAGTGGAAGGCCAGGTGAAGGACGATGCGATCCTCGCTTCCAACACCTCTACCATCTCCATCAACCTGCTGGCCAAGGCGCTCAAGCGCCCGGAAAACTTCGTCGGCATGCACTTCTTCAACCCGGTGCACATGATGCCGCTGGTTGAAGTGATCCGTGGCGAGAAGTCCAGTGACGTGGCGGTCGCCACCACCGTGGCCTACGCCAAGAAAATGGGCAAGAACCCGA > NC_002947/2438299‑2438591 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |