| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,540,852 | T→A | 14.3% | intergenic (+22/+27) | PP_2232 → / ← PP_2233 | XRE family transcriptional regulator/isochorismatase family hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,540,852 | 0 | T | A | 14.3% | 63.8 / 4.8 | 28 | intergenic (+22/+27) | PP_2232/PP_2233 | XRE family transcriptional regulator/isochorismatase family hydrolase |
| Reads supporting (aligned to +/- strand): ref base T (12/12); new base A (2/2); total (14/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.27e-01 | |||||||||||
ATCGAAGAGGTCGAGCATCGCTTGCAGGTGGGGCAGTTCCATGTGTTCCCCAGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATCATGCACATGAGCCGCCGGCACCTGCTTGCCGTCGAACGCCAGTGGCAGGGT > NC_002947/2540708‑2541001 | atcGAAGAGGTCGAGCATCGCTTGCAGGTGGGGCAGTTCCATGTGTTCCCCAGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCa < 1:767022/150‑1 (MQ=255) ggTCGAGCATCGCTTGCAGGTGGGGCAGTTCCATGTGTTCCCCAGTAACTGCCGGTATTCCTACCGTAACGATGGAGTCGTGGCTGGTCGGTTCACTCGCATGCTGGCGATTGTAGCCTGCAGACTTTGGGGCTGCACAGCAG‑CCCCaaa < 1:444890/150‑1 (MQ=255) tCGCTTGCAGGTGGGGCAGTTCCATGTGTTCCCCAGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCtgt < 1:173662/130‑1 (MQ=255) tCGCTTGCAGGTGGGGCAGTTCCATGTGTTCCCCAGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCtgt > 2:173662/1‑130 (MQ=255) cTTGCAGGTGGGGCAGTTCCATGTGTTCCCCAGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCACAGCAG‑CCCCaaa > 2:313347/1‑138 (MQ=255) cTTGCAGGTGGGGCAGTTCCATGTGTTCCCCAGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCACAGCAG‑CCCCaaa < 1:313347/138‑1 (MQ=255) gCAGTTCCATGTGTTCCCCAGTAACTGCCGGTTTGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTca < 2:483015/150‑1 (MQ=255) tgtTCCCAAGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGTTGTTCGGTTTGTGCGCAATGTGGGCATCTGAGCCTGCAGATTTTGCGGAGCCTGTGCAG‑CCCAAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCtcgtcg < 1:662294/150‑1 (MQ=255) ttCCCCAGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTc > 2:723576/1‑136 (MQ=255) ttCCCCAGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTc < 1:723576/136‑1 (MQ=255) cAGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTca > 1:564777/1‑150 (MQ=255) aGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGa < 2:304172/120‑1 (MQ=255) aGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCGGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGa > 1:304172/1‑120 (MQ=255) gTATTCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTTGCAt < 2:189434/150‑1 (MQ=255) gATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAaacgccaacgc > 1:461745/1‑150 (MQ=255) tggtggCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGAt < 1:260432/87‑1 (MQ=255) tggtggCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGAt > 2:260432/1‑87 (MQ=255) gtggCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCt > 1:760812/1‑101 (MQ=255) gtggCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCt < 2:760812/101‑1 (MQ=255) cTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGaa < 2:304862/150‑1 (MQ=255) ttCGGTTGGTGCGCAATGTGGCCATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTTGCATAGGCAAACGCCACCGCCGCCATC‑GCCGAATCa > 2:334866/1‑150 (MQ=255) aaTGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATCATGCACATGAgccgc > 1:335133/1‑150 (MQ=255) aaTGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATCATGCACATGAgccgc > 1:664270/1‑150 (MQ=255) cTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATCATGCACATGAGCCGCCGGCACCTGCTTGCCGt < 2:595179/150‑1 (MQ=255) tGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATCATg > 2:344962/1‑120 (MQ=255) tGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATCATg < 1:344962/120‑1 (MQ=255) aGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCtt < 1:375382/69‑1 (MQ=255) aGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCtt > 2:375382/1‑69 (MQ=255) aCTTTGGGGCTGCTGTGCAGCCCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCCAC‑CAATCACCTGCGGAATCATGCACATGAGCCGCCGGCACCTGCTTGCCGTCGAAc > 2:22788/1‑150 (MQ=255) tttGGGGCTGCACAGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTGGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATCATGCACATGAGCCGCCGGCACCTGCTTGCCGTCGAACGcc > 1:532076/1‑150 (MQ=255) tgctgTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATTATGCACATGAGCCGCCGGCACCTGCTTGCCGTCGAACGCCAGTGGCAg < 2:335133/150‑1 (MQ=255) ctgTGCAGCCCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATCATGCACATGAGCCGCCGGCTCCGGCTTGCCGTCGAACGCCAGTGGCAgg < 1:22788/150‑1 (MQ=255) ctgTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATCATGCACATGAGCCGCCGGCACCTGCTTGCCGTCGAACGCCAGTGGCAggg < 2:564777/150‑1 (MQ=255) tgtgCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATCATGCACATGAGCCGCCGGCACCTGCTTGCCGTCGAACGCCAGTGGCAGGGt > 2:768675/1‑150 (MQ=255) | ATCGAAGAGGTCGAGCATCGCTTGCAGGTGGGGCAGTTCCATGTGTTCCCCAGTAACTGCCGGTATGCCTACCGTAACGATGGCGTGGTGGCTGTTCGGTTTGTGCGCAATGTGGCGATTTGAGCCTGCAGACTTTGGGGCTGCTGTGCAG‑CCCCAAAGGTCTCAAGCCGATCAGCTTTTCAGCAGCTCGTCGGTCTTCACCACATTGGCATAGGCAAACGCCAACGCCGCCATC‑GCCGAATCATGCACATGAGCCGCCGGCACCTGCTTGCCGTCGAACGCCAGTGGCAGGGT > NC_002947/2540708‑2541001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |