Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,931,582 | A→T | 12.2% | F855I (TTC→ATC) ‡ | PP_2566 ← | leucine‑rich repeat‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,931,582 | 0 | A | T | 12.2% | 110.3 / 7.2 | 41 | F855I (TTC→ATC) ‡ | PP_2566 | leucine‑rich repeat‑containing protein |
Reads supporting (aligned to +/- strand): ref base A (19/17); new base T (3/2); total (22/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01 |
GTTGATGGGCTGTTGGCCAAGCAGTGAGGCGCAGTGCTGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTCAAGCGCGCTGTCC > NC_002947/2931433‑2931727 | gTTGATGGGCTGTTGGCCAAGCAGTGAGGCGCAGTGCTGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGaa < 1:558733/150‑1 (MQ=255) ttGGCCAAGCAGTGAGGCGCAGTGCTGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCgaggag < 2:116951/150‑1 (MQ=255) tGGCCAAGCAGTGAGGCGCAGTGCTGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGaggagg < 1:544435/150‑1 (MQ=255) gggCGAACCAGGGATGCGCAGGGCTGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGaggagg < 1:393232/149‑1 (MQ=255) ccAAGCAGTGAGGCGCAGTGCTGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGTTCAGGcccagc > 2:287996/1‑140 (MQ=255) ccAAGCAGTGAGGCGCAGTGCTGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGTTCAGGCCcagc < 1:287996/144‑2 (MQ=255) aaGCAGTGAGGCGCAGTGCTGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACg > 1:845878/1‑150 (MQ=255) aGGCGCAGTGCTGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCTGAGGAGGGCACGATCAAGcc < 1:537978/150‑1 (MQ=255) gcgcAGTGCTGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCcgc > 2:442464/1‑150 (MQ=255) tGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCt > 2:423095/1‑150 (MQ=255) gCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTTGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTg > 2:154731/1‑150 (MQ=255) cACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGaa < 2:99724/150‑1 (MQ=255) acgtAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGAGCGACGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAg > 1:450598/4‑150 (MQ=255) cTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGc > 1:581406/1‑150 (MQ=255) ggCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGTTCAGGccca < 1:384308/107‑3 (MQ=255) ggCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGTTCAGGccca > 2:384308/1‑105 (MQ=255) ggCGAGTTGCAGCAACCGAGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCATCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTAGGCCTGAACAGTCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGc > 2:563488/1‑150 (MQ=255) gCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCt > 1:351520/1‑150 (MQ=255) aGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTcc < 2:581406/150‑1 (MQ=255) ttGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTc < 1:727090/150‑1 (MQ=255) gctgaaCCGGCCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGACGTGCTTCCTCGGc > 1:441878/5‑150 (MQ=255) gcaACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGcccat > 1:448522/1‑94 (MQ=255) gcaACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGcccat < 2:448522/97‑4 (MQ=255) ggCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAg < 2:434844/150‑1 (MQ=255) gCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGc > 2:451641/1‑150 (MQ=255) ttCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCAc < 1:423095/150‑1 (MQ=255) aGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCg > 1:818912/1‑150 (MQ=255) cTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTcc < 2:845878/150‑1 (MQ=255) gggTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTCCGttt < 2:743426/150‑1 (MQ=255) ggCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACg > 2:352518/1‑150 (MQ=255) ttGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTc < 2:415139/150‑1 (MQ=255) cAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCgg < 2:170454/110‑1 (MQ=255) cAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCgg > 1:170454/1‑110 (MQ=255) cAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGCCGGTTTGTTAGAAGTTcccc > 2:49872/1‑149 (MQ=255) cTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGc < 1:49872/150‑1 (MQ=255) cTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTTCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTTAGACGTTCCCGTTAGGCGtt > 2:405757/1‑150 (MQ=255) cGTAGACTGTCGTCGTTGGCGAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATg > 2:435310/1‑150 (MQ=255) aGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTg < 2:150717/150‑1 (MQ=255) ggCCATGTTGGGCCTGAACAGTCCGAGGATGCCACGATACAACCGCCCTCGACCTTGCAGAAGGCGTGCTTCATTACCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTc < 1:405757/150‑1 (MQ=255) cctcctcggCCTGTTCAGGCCCAGGAGGGCACGATCAAGCCGTGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTCAAg > 2:54831/8‑150 (MQ=255) cAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTCAAg > 1:533518/1‑150 (MQ=255) cTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTCAAGCGCGCTGTcc > 1:495668/1‑150 (MQ=255) | GTTGATGGGCTGTTGGCCAAGCAGTGAGGCGCAGTGCTGGCGATCACCTAGGGCGAGTTGCAGCAACCGGGCCGGTTCAGCCTGCGGGTGCGCGGCTTGCAGCGCCTGCTTGATGCGTAGACTGTCGTCGTTGGCCAGGCTGGGCCTGAACAGGCCGAGGAGGGCACGATCAAGCCGCGCTCGAGCTTGCAGAAGGCGTGCTTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTCAAGCGCGCTGTCC > NC_002947/2931433‑2931727 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |