Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,077,158 G→T 7.3% A246A (GCC→GCA)  PP_2687 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,077,1580GT 7.3% 175.2 / 2.5 55A246A (GCC→GCA) PP_2687hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (28/23);  new base T (2/2);  total (30/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01

TTAGCCAGGGATGCAACCCTGCATCGAGGATTTCGTCGATTGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTCCATTGGTAATAACCGCGGGCGG  >  NC_002947/3077013‑3077306
                                                                                                                                                 |                                                                                                                                                    
ttAGCCAGGGATGCAACCCTGCATCGAGGATTTCGTCGATTGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCAt                                                                                                                                                  <  2:267901/150‑1 (MQ=255)
   tgcAGGGATGCATCCCTGCATCGAGGATTTCGTCGATTGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCa                                                                                                                                               >  1:331769/3‑150 (MQ=255)
      aGGGATGCAACCCTGCATCGAGGATTTCGTCGATTGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCagcg                                                                                                                                            >  2:621788/1‑150 (MQ=255)
      aGGGATGCAACCCTGCATCGAGGATTTCGTCGATCGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCagcg                                                                                                                                            >  1:495932/1‑150 (MQ=255)
       gggATGCAACCCTGCATCGAGGATTTCGTCGATTGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCagcga                                                                                                                                           <  2:503334/150‑1 (MQ=255)
           tGCAACCCTTCATCGAGGATTTCGTCGATTGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGTCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAgcgc                                                                                                                                       <  2:373436/150‑1 (MQ=255)
                   tGCATCGAGGATTTCGTCGATTGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGCTGCATGCCTGCatcgaggaa                                                                                                                                       >  2:629937/1‑139 (MQ=255)
                   tGCATCGAGGATTTCGTCGATTGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGCTGCATGCCTGCatcgaggaa                                                                                                                                       <  1:629937/142‑4 (MQ=255)
                      aTCGAGGATTTCGTCGATTGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCAc                                                                                                                            <  1:79314/150‑1 (MQ=255)
                                 cgtcgATTGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAAcagca                                                                                                                 <  1:516435/150‑1 (MQ=255)
                                        tGCGGTGTAGCGCAGGCGCGCGTTCACTTCGGCGGCCATGTGCTGGGCGGCTCGCACGGCACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGTCCGGCACGTCCACCCGCACCCGCAGCACCTc                                                                                                          <  2:1242/150‑1 (MQ=255)
                                                   gcAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTGCATCCGCAACAGCAGCAACTCGTACAccggcc                                                                                               >  2:262065/1‑150 (MQ=255)
                                                       gcgcgcGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCg                                                                                                         <  2:583985/136‑1 (MQ=255)
                                                       gcgcgcGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCg                                                                                                         >  1:583985/1‑136 (MQ=255)
                                                           gcgTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTg                                                                                       >  1:261276/1‑150 (MQ=255)
                                                              ttCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGt                                                                                    >  1:5387/1‑150 (MQ=255)
                                                                cAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTgc                                                                                  >  2:33699/1‑150 (MQ=255)
                                                                         ggcCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCCACGCCCGACCATCGGCCAGCGGCTGAGCGCGGGGTGCGGCGCGATa                                                                         >  2:309861/1‑150 (MQ=255)
                                                                            cATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGaca                                                                                                     >  1:282370/1‑119 (MQ=255)
                                                                            cATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGaca                                                                                                     <  2:282370/119‑1 (MQ=255)
                                                                            cATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATa                                                                         <  1:690163/147‑1 (MQ=255)
                                                                            cATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATa                                                                         >  2:690163/1‑147 (MQ=255)
                                                                             aTGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGc                                                                     >  1:826658/1‑150 (MQ=255)
                                                                              tGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCggg                                                                                            <  2:456435/126‑1 (MQ=255)
                                                                              tGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCggg                                                                                            >  1:456435/1‑126 (MQ=255)
                                                                                     ggcggcACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGaa                                                             <  2:5387/150‑1 (MQ=255)
                                                                                     ggcggcACGCCCGGTACTGCCCGGCAGGCCTGCACGGGAGTGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGaa                                                             <  1:262065/150‑1 (MQ=255)
                                                                                       cgccACTCCCGGTACTGCCCGGCAGGCCTGCCAGGATAAGGTCCAGTTCCTCGATGCAGGAATGCAGCGAGCGCGGCACGTTCGCCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAgg                                                           <  2:73570/147‑1 (MQ=255)
                                                                                          cACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCtt                                                        <  1:33699/150‑1 (MQ=255)
                                                                                           aCGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGGAgcattc                                                       <  2:214422/150‑6 (MQ=255)
                                                                                              acaggTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTa                                                    >  2:306444/4‑150 (MQ=255)
                                                                                                      tGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCa                                            >  2:352508/1‑150 (MQ=255)
                                                                                                       gCCCGGCAGGCCCGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAg                                           >  2:449099/1‑150 (MQ=255)
                                                                                                                     ccAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGa                                                 <  2:78999/130‑1 (MQ=255)
                                                                                                                     ccAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGa                                                 >  1:78999/1‑130 (MQ=255)
                                                                                                                     ccAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAggg                             >  2:351728/1‑150 (MQ=255)
                                                                                                                     ccAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAggg                             <  2:826658/150‑1 (MQ=255)
                                                                                                                           tCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGt                                                                                                                                >  2:672204/1‑45 (MQ=255)
                                                                                                                           tCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGt                                                                                                                                <  1:672204/45‑1 (MQ=255)
                                                                                                                           tCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTcc                       >  2:277595/1‑150 (MQ=255)
                                                                                                                             aGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGTACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACAAGGTCAGCGCGCGCAGCAGGGCGCTCCAt                     >  1:332902/1‑150 (MQ=255)
                                                                                                                                tCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGTACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACAAGGTCAGCGCGCGCAGCAGGGCGCTCCATTgg                  <  2:332902/150‑1 (MQ=255)
                                                                                                                                tCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTCCATTgg                  >  1:351633/1‑150 (MQ=255)
                                                                                                                                tCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTCCATTgg                  <  1:352508/150‑1 (MQ=255)
                                                                                                                                tCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTCCATTgg                  >  1:190126/1‑150 (MQ=255)
                                                                                                                                    gTTCCTCGATGCAGGCATGCAGCGCGAGCGGCACGTCCACTCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTCCATTGGtaat              <  2:521180/150‑1 (MQ=255)
                                                                                                                                    cgcgcTCGCTGCATGCCTGCATCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTa                                                    >  2:842556/5‑112 (MQ=255)
                                                                                                                                    cgcgcTCGCTGCATGCCTGCATCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTa                                                    <  1:842556/108‑1 (MQ=255)
                                                                                                                                     ttCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAg                                                <  1:591207/115‑1 (MQ=255)
                                                                                                                                     ttCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTCCATTGGtaata             >  1:521180/1‑150 (MQ=255)
                                                                                                                                     ttCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCAACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAg                                                >  2:591207/1‑115 (MQ=255)
                                                                                                                                      tCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTCCATTGGtaataa            <  2:331769/150‑1 (MQ=255)
                                                                                                                                         tCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTCCATTGGTAATAACcg         >  1:611233/1‑150 (MQ=255)
                                                                                                                                            aTGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTCCATTGGTAATAACCgcgg      >  1:820196/1‑150 (MQ=255)
                                                                                                                                                aGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTCCATTGGTAATAACCgcgggcgg  >  2:804409/1‑150 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
TTAGCCAGGGATGCAACCCTGCATCGAGGATTTCGTCGATTGCGGTGTAGCGCAGGCGCGCGTTCAGTTCGGCGGCCATGCGCTGGGCGGCACGCCCGGTACTGCCCGGCAGGCCTGCCAGGATCAGGTCCAGTTCCTCGATGCAGGCATGCAGCGAGCGCGGCACGTCCACCCGCAACAGCAGCAACTCGGACACCGGCCGGGCGCTGGGTGCGGCGCGATAGAGCTCGTTGAAGGCTTCGTACGAGGTCAGCGCGCGCAGCAGGGCGCTCCATTGGTAATAACCGCGGGCGG  >  NC_002947/3077013‑3077306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑