| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,102,237 | T→A | 11.5% | L9M (TTG→ATG) ‡ | PP_2712 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,102,237 | 0 | T | A | 11.5% | 117.8 / 7.0 | 44 | L9M (TTG→ATG) ‡ | PP_2712 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (18/20); new base A (2/3); total (20/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 | |||||||||||
AAAAGCTCTTCGTGCGTATCAACGGCATGTTGCCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCAAATGCCCAAGGATAAGCGTGCCGACGCCTTCGAAAAGCTGGCAGG > NC_002947/3102098‑3102376 | aaaaGCTCTTCGTGCGTATCAACGGCATGTTGCCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCAAGCTGGCaat < 2:718164/150‑3 (MQ=255)aaaaGCTCTTCGTGCGTATCAACGGCATGTTGCCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCAAGCTGGCaat < 2:168660/150‑3 (MQ=255) aaaGCTCTTCGTGCGTATCAACGGCCTCTGACCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCAttt > 1:451148/1‑150 (MQ=255) gCTCTTCGTGCGTATCAAAGGCATGTTGCCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGACGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCa < 1:683984/150‑1 (MQ=255) ctctTCGTGCGTATCAACGGCATGTTGCCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGTAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCAc > 2:574582/1‑150 (MQ=255) tctTCGTGCGTATCAACGGCATGTTGCCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCAcc < 1:375799/150‑1 (MQ=255) tCAACGGCATGTTGCCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGCCATCTGGCCCCTTGACCTGGGc > 2:370841/1‑150 (MQ=255) aaCGGCATGTTGCCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCAt > 2:656317/1‑150 (MQ=255) aTGTTGCCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCAATGCCAGCAAGCTGGCaat < 1:672856/124‑3 (MQ=255) aTGTTGCCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCAATGCCAGCAAGCTGGCaat > 2:672856/1‑122 (MQ=255) ggCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCCCCGTGAGCTGGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAggcaggca < 1:370841/150‑1 (MQ=255) ggCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAggcaggca < 1:475627/150‑1 (MQ=255) ggCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAggcaggca < 1:796124/150‑1 (MQ=255) ggCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAggcaggca < 1:796233/150‑1 (MQ=255) cATGGTCGATCGCGCCCTACGCAAGAAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGcagc < 2:273306/150‑1 (MQ=255) aTGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCAtt > 1:259896/1‑133 (MQ=255) aTGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCAtt < 2:259896/133‑1 (MQ=255) cgcgCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGTAGTCGAACAATATAACCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGa < 1:574582/150‑1 (MQ=255) gcgcTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACcaggca > 1:329266/1‑133 (MQ=255) gcgcTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACcaggca < 2:329266/133‑1 (MQ=255) gcTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTg > 1:815243/1‑150 (MQ=255) tctACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCt < 1:205807/92‑1 (MQ=255) tctACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCt > 2:205807/1‑92 (MQ=255) ctACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCACTGAGGCAGCCAGCGCCTGAGTGATc < 1:331418/150‑1 (MQ=255) ccAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTggg < 2:83122/150‑1 (MQ=255) aGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGgcg > 2:837329/1‑150 (MQ=255) gTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTg > 1:467341/1‑145 (MQ=255) gTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTg < 2:467341/145‑1 (MQ=255) gcTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTa > 2:24493/1‑150 (MQ=255) tatCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCaa > 2:507784/1‑150 (MQ=255) atCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTACCTGTAAACGGTCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCaaa < 2:451148/150‑1 (MQ=255) ggCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCAAATGc > 2:483335/1‑150 (MQ=255) gCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCAAATGCCCaa < 2:815243/150‑1 (MQ=255) tCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCAAATGCCCAAGGATa > 1:685214/1‑150 (MQ=255) aCAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCAAATGCCCAAGGATAAGCGTGCCGACGc < 1:196705/150‑1 (MQ=255) gAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCAAATGCCCAAGGATAAGCGTGCCGACGCCTTCGa > 2:289236/1‑150 (MQ=255) aGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCAAATGCCCAAGGATAAGCGTGCCGACGCCTTCGaaa < 2:678889/150‑1 (MQ=255) gCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCAAATGCCCAAGGATAAGCGTGCCGACGCCTTCGaaaa < 1:24493/150‑1 (MQ=255) gTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGa > 1:505687/1‑75 (MQ=255) gTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGa < 2:505687/75‑1 (MQ=255) gTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCAAATGCCCAAGGATAAGCGTGCCGACGCCTTCGAAAAGCTGGc > 2:200809/1‑150 (MQ=255) ttCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTg < 1:523869/45‑1 (MQ=255) ttCATTGCCAGCTTGCTGGCATTTGCACCCTTCACATGGGCATTg > 2:523869/1‑45 (MQ=255) aaatGCCAGCAAGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCAAATGCCCAAGGATAAGCGTGCCGACGCCTTCGAAAAGCTGGCAgg > 2:668778/4‑150 (MQ=255) | AAAAGCTCTTCGTGCGTATCAACGGCATGTTGCCGGGCATGGTCGATCGCGCTCTACGCAAGCAACTGCCAGTCATTCGCCGCTATATCGGCAGCCACTCCAAGGAGTCGAACAAATGAAGCGTCTGTTCATTGCCAGCTTGCTGGCATTTGCACCCTTCACCTGGGCATTGGACCAGGCAGGCAGCCAGCGCCTGAGTGATCTGCAGCAGCGCTGGGCGCAGATTCAGTACCAAATGCCCAAGGATAAGCGTGCCGACGCCTTCGAAAAGCTGGCAGG > NC_002947/3102098‑3102376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |