| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,137,695 | C→T | 12.5% | intergenic (+80/‑210) | PP_2753 → / → PP_2754 | ABC transporter ATP‑binding protein/OprD family outer membrane porin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,137,695 | 0 | C | T | 12.5% | 76.6 / 3.3 | 32 | intergenic (+80/‑210) | PP_2753/PP_2754 | ABC transporter ATP‑binding protein/OprD family outer membrane porin |
| Reads supporting (aligned to +/- strand): ref base C (14/14); new base T (2/2); total (16/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
TGCTGCCGAGCTGGCCGCGCGGGAAGATATTCAGCATTTCTACCTGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCTTGAATAACAATGG‑TTTTTTTTTGTTGGCATGG > NC_002947/3137555‑3137837 | tgctgcCGAGCTGGCCGCGCGGGAAGATATTCAGCATTTCTACCTGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCTGGGCCGCGt < 1:726411/150‑1 (MQ=255) gAGCTGGCCGCGCGGGAAGATATTCAGCATTTCTACCTGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTc < 1:353309/150‑1 (MQ=255) gAAGATATTCAGCATTTCTACCTGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAgcg > 1:115790/1‑150 (MQ=255) aaGATATTCAGCATTTCTACCTGGGCGGCAAGGGCTGACTGAGCGCTGGCCGGTGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAgcgc < 1:692446/150‑1 (MQ=255) aGATATTCAGCATTTCTACCTGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCt < 2:115790/150‑1 (MQ=255) atatTCAGCATTTCTACCTGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCtgt < 1:37826/150‑1 (MQ=255) ttCAGCATTTCTACCTGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGgc > 2:812834/1‑150 (MQ=255) tCAGCATTTCTACCTGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGgcg > 1:715434/1‑150 (MQ=255) aCCTGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAAcagc < 1:767967/150‑1 (MQ=255) cTGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAAcagcag < 1:255501/150‑1 (MQ=255) tGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGt > 1:285359/1‑150 (MQ=255) aGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGAt > 1:349936/1‑150 (MQ=255) gactgaGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑c < 2:134499/150‑1 (MQ=255) tgaGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCtgt < 1:296980/114‑1 (MQ=255) tgaGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCtgt > 2:296980/1‑114 (MQ=255) tgaGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGtt < 2:114107/133‑1 (MQ=255) tgaGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGtt > 1:114107/1‑133 (MQ=255) cGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGcat < 1:698020/150‑1 (MQ=255) gcAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCACAGGCAGAGCTGTTTTCGCCCTGACTAAATCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCAGAGTGTTGAGGAAgtt > 1:320363/1‑150 (MQ=255) aTACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCGGGTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCaa < 2:715434/150‑1 (MQ=255) ccTTTTACTGAGTAGGTGATGTTCCCTTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGATT‑CGCAGACGGCGCATCATAGTGTTGAGGAAGTTGTTCAATTGCtt < 1:771155/150‑1 (MQ=255) aCTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCTTGAATaa > 1:792876/1‑150 (MQ=255) aGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCTTGAATAACAAt > 1:11637/1‑150 (MQ=255) gTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCTTGAATAACAATg > 2:842128/1‑150 (MQ=255) ttCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCtt > 1:139461/1‑129 (MQ=255) ttCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCtt < 2:139461/129‑1 (MQ=255) aaaCGCGGCCTGGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTTACCCCGCAGTGGCGAC‑CAGCTGTAAGGAAGTTGTTCAATTGCTTGAATAACAATGG‑GTTTTTTTTGTTGGCa > 1:316917/2‑150 (MQ=255) aaCGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCTTGAATAACAATGG‑TTTTTTTTTGTTGGCAt > 1:313721/1‑150 (MQ=255) aCGGGGGCCAGGCCGCGTTTTTTTCGCCCCGACGAAAGCGCTGTGGTGCCGGCAAAAGCAGTTGTGGAGGTTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCTTGAATAACAATGGTTTTTTTTTTGTTGGCAt < 2:349936/150‑1 (MQ=255) aCGCGGCCTGGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCTTg < 2:126117/121‑1 (MQ=255) aCGCGGCCTGGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCTTg > 1:126117/1‑121 (MQ=255) aCGCGGCCCAGGCCGCG‑TTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCTTGAATAACAATGG‑TTTTTTTTTGTTGGCATgg > 1:10467/1‑150 (MQ=255) | TGCTGCCGAGCTGGCCGCGCGGGAAGATATTCAGCATTTCTACCTGGGCGGCAAGGGCTGACTGAGCGGTGGCGACGGCTGTGGAGCGGCGCAGTCATACCGCCTTTTACTGAGTAGGTGATGTTCCATTCAACGCGGCCCAGGCCGCGTTTTTTTCGCCCTGACGAAAGCGCTGTGGCGCCGGCAACAGCAGTTGTGCAGATTGCTT‑CGCAGACGGAGCATCATAGTGTTGAGGAAGTTGTTCAATTGCTTGAATAACAATGG‑TTTTTTTTTGTTGGCATGG > NC_002947/3137555‑3137837 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |