| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,311,787 | C→T | 18.1% | intergenic (+66/‑22) | gabP‑III → / → PP_2912 | gamma‑aminobutyrate permease/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,311,787 | 0 | C | T | 18.1% | 40.4 / 2.3 | 22 | intergenic (+66/‑22) | gabP‑III/PP_2912 | gamma‑aminobutyrate permease/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (7/11); new base T (2/2); total (9/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01 | |||||||||||
GCTGGTGACCCGGCGCCGGGCGCGCGGCGGGGCCGTGGCTGGCGTAGGGCAGGGCGCCTGATTCGTCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGCCTTGTCGACGAAGTACTACGGCCGTTGATGAGTGGCAAGGAAGCCGCTGTGTACGTGGTGCGCTGTGGC > NC_002947/3311661‑3311919 | gCTGGTGACCCGGCGCCGTTCGCGCGGCTGGGCCGGGGCTGTCGGAGGGCAGGGCGCCTGATTCGTCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAgacctgt < 1:29789/150‑7 (MQ=255) cTGGTGACCCGGCGCCGGGCGCGCGGCGGGGCCGTGGCTGGCGTAGGGCAGGGCGCCTGATTCGTCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCtgatg > 1:341123/1‑150 (MQ=255) tGGTGACCCGGCGCCGGGCGCGCGGCGGGGCCGTGGCTGGCGTAGGGCAGGGCGCCTGATTCGTCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCtgatga < 2:341123/150‑1 (MQ=255) tGGTGACCCGGCGCCGGGCGCGCGGCGGGGCCGTGGCTGGCGTAGGGCAGGGCGCCTGATTCGTCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCtgatga > 1:92080/1‑150 (MQ=255) gTGACCCGGCGCCGGGCGCGCGGCGGGGCCGTGGCTGGCGTAGGGCAGGGCGCCTGATTCGTCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAg > 2:666844/1‑150 (MQ=255) aCCCGGCGCCGGGCGCGCGGCGGGGCCGTGGCTGGCGTAGGGCAGGGCGCCTGATTCGTCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGaca < 1:686936/150‑1 (MQ=255) cccGGCGCCGGGCGCGCGGCGGGGCCGTGGCTGGCGTAGGGCAGGGCGCCTGATTCGTCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGacac < 1:469816/150‑1 (MQ=255) cccGGCGCCGGGCGAGAGGGGGAGCACTGGCTGCTAGAGGTCATGGCGCCTGATTCGTCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGacac < 2:309840/150‑1 (MQ=255) ggCGCGCGGCGGGGCCGTGGCTGGCGTAGGGCAGGGCGCCTGATTCGTCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAAt < 2:395731/150‑1 (MQ=255) gcgcCTGATTCGTCCGGCCTGAAGACAGACGAGAAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGCCTTGTCGACGAAg < 2:34863/150‑1 (MQ=255) tCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGCCTTGTCGACGAAGTACTACGGCCGt < 2:92080/150‑1 (MQ=255) ccGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGCCTTGTCGACGAAGTACTACGGCCGtt < 1:666844/150‑1 (MQ=255) gacagacGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGTCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGaa < 2:266940/91‑1 (MQ=255) gacagacGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGTCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGaa < 2:266944/91‑1 (MQ=255) gacagacGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGTCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGaa > 1:266944/1‑91 (MQ=255) gacagacGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGTCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGaa > 1:266940/1‑91 (MQ=255) acGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGc > 1:675305/1‑109 (MQ=255) acGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGc < 2:675305/109‑1 (MQ=255) gCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGCCTTGTCGACGAAGtactac < 2:261/124‑1 (MQ=255) gCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGCCTTGTCGACGAAGtactac > 1:261/1‑124 (MQ=255) gCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGCCTTGTCGACGAAGTACTACGGCCGTTGATGAGTGGCAAGGAAGcc > 1:467777/1‑150 (MQ=255) gATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGCCTTGTCGACGAAGTACTACGGCCGTTGATGAGTGGCAAGGAAGCCGCTGTGTACGTGGTGCGCTGTGGc > 1:118635/1‑150 (MQ=255) ccAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGCCTTGTCGACGAAGTACTACGGCCGTTGATGAGTGGCAAGGAAGCCGCtgt < 1:65057/114‑1 (MQ=255) ccAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGCCTTGTCGACGAAGTACTACGGCCGTTGATGAGTGGCAAGGAAGCCGCtgt > 2:65057/1‑114 (MQ=255) | GCTGGTGACCCGGCGCCGGGCGCGCGGCGGGGCCGTGGCTGGCGTAGGGCAGGGCGCCTGATTCGTCCGGCCTGAAGACAGACGAGCAAGTCGCATCAGGCTGTGAGAGGATGTCCGCCAACAAAGCCAGGACCCTGAACGCAGCCTGATGAAGACACCTAAAAGAATCGAACCGTTGATCGAAGACGGCCTTGTCGACGAAGTACTACGGCCGTTGATGAGTGGCAAGGAAGCCGCTGTGTACGTGGTGCGCTGTGGC > NC_002947/3311661‑3311919 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |