Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,632,134 | C→T | 10.0% | L329L (CTG→TTG) | PP_5590 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,632,134 | 0 | C | T | 10.0% | 108.9 / 3.6 | 40 | L329L (CTG→TTG) | PP_5590 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (17/19); new base T (2/2); total (19/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01 |
CCGGCCACCGCCGGCGTCATGAGCTTCGATGAGCTGTACGTGTTCAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTG > NC_002947/3631987‑3632283 | ccGGCCACCGCCGGCGTCATGAGCTTCGATGAGCTGTACGTGTTCAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCgctg > 1:234073/1‑150 (MQ=255) ccGGCCACCGCCGGCGTCATGAGCTTCGATGAGCTGTACGTGTTCAACGGTCGCCTCAACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCgctg > 2:214756/1‑150 (MQ=255) cACCGCCGGCGTCATGAGCTTCGATGAGCTGTACGTGTTCAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGctgctg < 1:529360/148‑1 (MQ=255) cACCGCCGGCGTCATGAGCTTCGATGAGCTGTACGTGTTCAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGctgctg > 2:529360/1‑148 (MQ=255) cACCGCCGGCGTCATGAGCTTCGATGAGCTGTACGTGTTAAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGc > 1:249667/1‑150 (MQ=255) cATGAGCTGCGATGAGCTGTACGTGTTCACCGGTCGCGTCGACCGCTTCTAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCt < 2:567325/150‑1 (MQ=255) gCTGTACGTGTTCAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCAt > 2:482858/1‑150 (MQ=255) cTGTACGTGTTCAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAGCGCCTCGGCGTTGCTGGc < 1:693834/122‑1 (MQ=255) cTGTACGTGTTCAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAGCGCCTCGGCGTTGCTGGc > 2:693834/1‑122 (MQ=255) cTGTACGTGTTCAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATc > 1:453036/1‑150 (MQ=255) gtTCAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGa < 2:232865/150‑1 (MQ=255) tCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGACGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACGgtgtgt > 2:82770/1‑150 (MQ=255) gCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTgtgggtgg > 2:521878/1‑150 (MQ=255) cTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGggtggt > 2:202992/1‑150 (MQ=255) ttCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGgtggtg > 2:404376/1‑150 (MQ=255) cGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGa < 1:202992/150‑1 (MQ=255) cGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGa < 1:521878/150‑1 (MQ=255) gAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCGCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGGGGAg > 1:127309/1‑150 (MQ=255) aGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAgg < 1:214756/150‑1 (MQ=255) gTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGc > 1:129057/1‑150 (MQ=255) gAAGCTGGTGGGCAAGAAGGGGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGAc > 1:746597/1‑150 (MQ=255) ggtggGCAAGAAGGAGATGTACCTCCTCTAAAACCCGAACAAGGTGGTCACCGCCAGCAACGCCGCGGCCCTGCGGGCTACCCATCACCTGAACCCCGACGCTATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTgaa < 2:2160/150‑1 (MQ=255) gCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATg < 1:482858/150‑1 (MQ=255) gCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATg < 2:462962/150‑1 (MQ=255) agaagGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGcc > 2:708918/1‑150 (MQ=255) ggAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAgcg > 1:640487/1‑150 (MQ=255) aTGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGCAGCTGCACCGTGTGTCGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCAt < 2:249667/150‑1 (MQ=255) tGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCCTGTGACGACGTGCCCCCCATCACCTGAACCCCGTCGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCAtg < 2:663555/150‑1 (MQ=255) gTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCAtgt < 2:453036/150‑1 (MQ=255) gTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCAtgt > 1:186026/1‑150 (MQ=255) aCATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGa < 2:129057/150‑1 (MQ=255) aCATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGCCCAGCGCCATGTGa > 1:442335/1‑150 (MQ=255) cATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGAt < 2:234073/150‑1 (MQ=255) ccccTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGcc > 2:14223/1‑150 (MQ=255) ccccTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCCGCCCCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGcc < 1:321060/150‑1 (MQ=255) ccTACAACGCCAACAAGGTGTTCACCGCCAGCAGCGCCTCGGCGTTGCTGGcg < 2:409472/53‑2 (MQ=17) ccTACAACGCCAACAAGGTGTTCACCGCCAGCAGCGCCTCGGCGTTGCTGGcg > 1:409472/1‑52 (MQ=17) ccTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCcgc > 2:828437/1‑150 (MQ=255) aCAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTa < 2:186026/150‑1 (MQ=255) gtgtTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTa < 2:171868/136‑1 (MQ=255) gtgtTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTa > 1:171868/1‑136 (MQ=255) aCCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGaa < 1:708918/150‑1 (MQ=255) gCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGac < 1:14223/150‑1 (MQ=255) gCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCt < 1:485265/150‑1 (MQ=255) ctgctgGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTg < 1:404376/150‑1 (MQ=255) | CCGGCCACCGCCGGCGTCATGAGCTTCGATGAGCTGTACGTGTTCAACGGTCGCCTCGACCGCTTCGAGTGGAAGCTGGTGGGCAAGAAGGAGATGTACATCCCCTACAACGCCAACAAGGTGTTCACCGCCAGCAACGCCGAGGCGCTGCTGGCCCCCCATCACCTGAACCCCGACGCCATCCGCTGGGAGCTGCACCGTGTGTGGGTGGTGGAGGCGACGCTGAAGAATGGCCAGCGCCATGTGATGCCGCGTAGCACCTACTACCTCGACGAAGACACCTGGGCTGCCGTGCTG > NC_002947/3631987‑3632283 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |