Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 243,622 | T→A | 11.7% | K183N (AAA→AAT) ‡ | fkl ← | FKBP‑type peptidyl‑prolyl cis‑trans isomerase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 243,622 | 0 | T | A | 11.7% | 90.8 / 3.7 | 34 | K183N (AAA→AAT) ‡ | fkl | FKBP‑type peptidyl‑prolyl cis‑trans isomerase |
Reads supporting (aligned to +/- strand): ref base T (15/15); new base A (2/2); total (17/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 |
AGAGGGTGCAGTGCAGGCCTGAGGTTGGCGTCAGTCGCCAACCGCCAGCAGTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGTCTGGTTCTGGTCGAATATTGAGCCGTCCGGCAATCTGCCCACATAGCGCACTTGCACTTTGCCGC > NC_002947/243478‑243764 | agagGGTGCAGTGCAGGCCTGAGGTTGGCGTCAGTCGCCAACCGCCAGCAGTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGgc < 2:837081/150‑1 (MQ=255) ggTTGGCGACTGACGCCAACCGCCAGCAGTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAg > 1:116559/1‑150 (MQ=255) ttGGCGTCAGTCGCCAACCGCCAGCAGTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCg < 2:83445/130‑1 (MQ=255) ttGGCGTCAGTCGCCAACCGCCAGCAGTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCg > 1:83445/1‑130 (MQ=255) gTCAGTCGCCAACCGCCAGCAGTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCt > 1:11075/1‑150 (MQ=255) gCCAACCGCCAGCAGTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCAAATGGCGcctg > 1:278779/1‑117 (MQ=255) gCCAACCGCCAGCAGTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCAAATGGCGcctg < 2:278779/119‑3 (MQ=255) cAACCGCCAGCAGTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCtt > 2:338881/1‑150 (MQ=255) cagTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTc < 2:414829/118‑1 (MQ=255) cagTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTc > 1:414829/1‑118 (MQ=255) gTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAAt > 1:98984/1‑150 (MQ=255) gtCGGTCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATCGGCTTGCGCTGAAGGAATTACGAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCTAGCATTCGATAACCGACTc > 2:595010/2‑150 (MQ=255) tctcGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCAAATGGCGcctg < 1:364970/99‑3 (MQ=255) tctcGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCAAATGGCGcctg > 2:364970/1‑97 (MQ=255) gAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGaa < 1:338881/150‑1 (MQ=255) aTACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAAcc > 1:681924/1‑134 (MQ=255) aTACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAAcc < 2:681924/134‑1 (MQ=255) aGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTggg < 2:98984/150‑1 (MQ=255) ggTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTACCGCTGCTGCACGTTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGt > 1:574672/1‑150 (MQ=255) tgtAGGGGGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGGGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGtct < 2:317686/150‑1 (MQ=255) tAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGtctgg < 1:720459/150‑1 (MQ=255) gggTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAgg < 2:292195/95‑1 (MQ=255) gggTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAgg > 1:292195/1‑95 (MQ=255) gTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGTGGGtcttgttct > 1:208939/1‑150 (MQ=255) aaTCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGTCTGGTTCTGGTc > 2:15612/1‑150 (MQ=255) aaTCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGTCTGGTTCTGGTc > 1:766090/1‑150 (MQ=255) cccGCGGCGCCATAGGCTTGCGCCGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGTCTGGTTCTGGTCGAATATTGAGCCGTcc < 1:595010/150‑1 (MQ=255) gcgcCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGTCTGGTTCTGGTCGAATATTGAGCCGTCCGGCAAt < 2:11075/150‑1 (MQ=255) ccATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGtctggttctg < 2:121908/122‑1 (MQ=255) ccATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGtctggttctg > 1:121908/1‑122 (MQ=255) cATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAAc < 2:435443/85‑1 (MQ=255) cATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAAc > 1:435443/1‑85 (MQ=255) cAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGTCTGGTTCTGGTCGAATATTGAGCCGTCCGGCAATCTGCCCACATAGCGCACTTGCACTTTgcc < 2:766090/150‑1 (MQ=255) ggCGACATTTGGAGACGATGTAACTCTTCGTGAATGCGACTTGCCAGCCTTCGATAACCGATTCTATTTGTGTCCATTGGGGGGTCTGGTTCTGGTCGAATATTGAGCCGTCCGGCAATCTGCCCACATAGCGCACTTGCACTTTgccgc < 1:15612/150‑1 (MQ=255) | AGAGGGTGCAGTGCAGGCCTGAGGTTGGCGTCAGTCGCCAACCGCCAGCAGTTCGATCTCGAATACCAAGGGGGTGTAGGGTGCAATCAGGTCTCCCGCCCCCTCGGCGCCATAGGCTTGCGCTGAAGGAATTACCAGGCGCCATTTGGCGCCGGTGTGCATTTTCGGCAAGGCGACCTGCCAGCCTTCGATAACCGAATCCAGGTTGAACCATTGGGGGGTCTGGTTCTGGTCGAATATTGAGCCGTCCGGCAATCTGCCCACATAGCGCACTTGCACTTTGCCGC > NC_002947/243478‑243764 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |