| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,026,285 | T→C | 7.1% | intergenic (‑39/+140) | PP_3550 ← / ← PP_3551 | transcriptional regulator EmrR/LuxR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,026,285 | 0 | T | C | 7.1% | 167.6 / 2.5 | 57 | intergenic (‑39/+140) | PP_3550/PP_3551 | transcriptional regulator EmrR/LuxR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (24/28); new base C (2/2); total (26/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.60e-01 | |||||||||||
CCTCTGACTCCAGGTGCCAGTCAAGAATGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAAC > NC_002947/4026138‑4026429 | ccTCTGACTCCAGGTGCCAGTCAAGAATGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTa < 1:770108/150‑1 (MQ=255) ctctGACTCCAGGTGCCAGTCAAGAATGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAg < 1:688704/150‑1 (MQ=255) ctctGACTCCAGGTGCCAGTCAAGAATGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAg > 1:454604/1‑150 (MQ=255) tGACTCCAGGTGCCAGTCAAGAATGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCa < 1:844844/150‑1 (MQ=255) gACTCCAGGTGCCAGTCAAGAATGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAg > 2:850967/1‑150 (MQ=255) cAGGTGCCAGTCAAGAATGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAAt < 1:399216/150‑1 (MQ=255) ccAGTCAAGAATGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGACAATTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCaaa < 1:573954/150‑1 (MQ=255) gTCAAGAATGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGcc > 1:387640/1‑150 (MQ=255) tCAAGAATGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCt > 2:11164/1‑150 (MQ=255) aaTGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCAtt < 1:516920/150‑1 (MQ=255) aTGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTa < 1:81610/150‑1 (MQ=255) cGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGc > 2:582951/1‑150 (MQ=255) ttGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTAt > 1:89784/1‑150 (MQ=255) gCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATACTc < 1:850967/150‑1 (MQ=255) tGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCgt < 1:286933/150‑1 (MQ=255) gcgGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCtt < 1:813031/122‑1 (MQ=255) gcgGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCtt > 2:813031/1‑122 (MQ=255) ccAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCt > 2:788809/1‑95 (MQ=255) ccAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCt < 1:788809/95‑1 (MQ=255) ccAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTc > 2:258277/1‑141 (MQ=255) ccAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTc < 1:258277/141‑1 (MQ=255) aaGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCTCTGGTTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGc > 1:225604/1‑150 (MQ=255) aaGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGc > 1:217991/1‑150 (MQ=255) cAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCgg > 1:738778/1‑150 (MQ=255) gCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCAc > 2:246161/1‑150 (MQ=255) cAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCa < 2:89784/150‑1 (MQ=255) aGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAg < 1:11164/150‑1 (MQ=255) tCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCgt < 1:219507/118‑1 (MQ=255) tCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCgt > 2:219507/1‑118 (MQ=255) tCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCg < 2:660577/129‑1 (MQ=255) tCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCg > 1:660577/1‑129 (MQ=255) gAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGgcgcgc < 2:387640/150‑1 (MQ=255) tttCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCg < 1:246161/150‑1 (MQ=255) ggAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGc > 2:526362/1‑145 (MQ=255) ggAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGc < 1:526362/145‑1 (MQ=255) gagaAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCAcc < 1:717274/120‑1 (MQ=255) gagaAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCAcc > 2:717274/1‑120 (MQ=255) aaaTGGTGCATCGTTGACTGCTCAGATACGTGTGTAGAAATATTACTGCGGAGGCAGGTAATGTCAAAGCCTTCATGAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGa < 2:692002/150‑1 (MQ=255) ccATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATc < 1:163675/139‑1 (MQ=255) ccATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATc > 2:163675/1‑139 (MQ=255) ttGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGgccgc > 1:795752/1‑150 (MQ=255) tGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGgccgcc < 2:217991/150‑1 (MQ=255) gTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAggg < 1:582951/150‑1 (MQ=255) tgtgtAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGccc > 1:195076/1‑105 (MQ=255) tgtgtAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGccc < 2:195076/105‑1 (MQ=255) tgtAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTa > 1:428874/1‑150 (MQ=255) gtAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTaa > 2:134081/1‑150 (MQ=255) aGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAgg < 2:795752/150‑1 (MQ=255) gAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAggg > 1:725196/1‑150 (MQ=255) atatTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGcc > 2:622237/1‑103 (MQ=255) atatTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGcc < 1:622237/103‑1 (MQ=255) atTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTCCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGtt < 2:454604/150‑1 (MQ=255) ttACTGCCTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTa < 1:605875/140‑1 (MQ=255) ttACTGCCTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTa > 2:605896/1‑140 (MQ=255) ttACTGCCTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTa > 2:605875/1‑140 (MQ=255) ttACTGCCTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTa < 1:605896/140‑1 (MQ=255) aCTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAAc < 2:725196/150‑1 (MQ=255) tGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGgc < 2:673005/114‑1 (MQ=255) tGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGgc > 1:673005/1‑114 (MQ=255) | CCTCTGACTCCAGGTGCCAGTCAAGAATGCGGTCTTTGAGGATCGCTGCGCGGCCAAGCAACATGCCGATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCCCCCGCAGGCGCGCCCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAAC > NC_002947/4026138‑4026429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |