Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,163,553 | G→A | 15.6% | intergenic (‑48/‑134) | pssA ← / → PP_3665 | CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,163,553 | 0 | G | A | 15.6% | 82.4 / 8.9 | 39 | intergenic (‑48/‑134) | pssA/PP_3665 | CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (14/18); new base A (3/3); total (17/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.81e-01 |
GGCAGGCGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGCACAGGAACAGCGCAAT > NC_002947/4163409‑4163688 | ggcaggcGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGcc > 2:428567/1‑150 (MQ=255) gcaggcGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCCTAGGTTCGGGGTTCACTGACGCGCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCa > 1:656112/1‑150 (MQ=255) caggcGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCCGCCGGCAGGCAGGGccga < 1:661209/150‑3 (MQ=255) aggcGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCAtt > 2:516502/1‑150 (MQ=255) ggcGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTc < 2:534128/150‑1 (MQ=255) ggcGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCCGCCGGCAGGCAGGGccg < 1:359460/147‑2 (MQ=255) ggcGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCCGCCGGCAGGCAGGGccg > 2:359460/1‑146 (MQ=255) gcgGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTg < 2:667676/150‑1 (MQ=255) cccTGGCATCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGc > 2:664114/1‑150 (MQ=255) aTCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCggg < 2:705299/150‑1 (MQ=255) ggCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGgtgt < 2:116299/150‑1 (MQ=255) gcaCCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGa < 1:428567/150‑1 (MQ=255) caCCTTGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGAt < 1:288378/150‑1 (MQ=255) aCCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCTGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATc < 1:186591/150‑1 (MQ=255) aCCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATc > 1:799573/1‑150 (MQ=255) ccTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCATGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTTGCCGCTGCATCCGGGGTGTATGATCg > 2:270967/1‑150 (MQ=255) ccTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCg > 2:585104/1‑150 (MQ=255) cTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGa > 2:734448/1‑150 (MQ=255) aTCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGGGTATGATCGACCCg > 2:186113/1‑150 (MQ=255) cTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCaa < 2:656112/150‑1 (MQ=255) gggggCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCGTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGAc < 1:188876/150‑1 (MQ=255) ccATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATa > 2:466863/1‑150 (MQ=255) cGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTg < 1:32222/150‑1 (MQ=255) cACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGa < 1:568734/150‑1 (MQ=255) cACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGc < 1:466863/150‑1 (MQ=255) ttCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCa < 1:516502/150‑1 (MQ=255) tgCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGca < 2:799573/150‑1 (MQ=255) cAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGcaca < 1:186113/150‑1 (MQ=255) aggaatggCCCCGCCGGCAGGCAGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGCACAGGAAc > 2:762751/7‑150 (MQ=255) cTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGCACAGGAACa < 1:385228/150‑1 (MQ=255) tGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCa < 2:798960/134‑1 (MQ=255) tGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCa > 1:798960/1‑134 (MQ=255) ggCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGCACAGGAACAGCGCa > 2:311143/1‑150 (MQ=255) gCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGCACAGGAACAGCGCaa < 1:585104/150‑1 (MQ=255) ccccgccggcaGGCAGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGCACAGGa < 2:548089/136‑1 (MQ=255) ccccGCCGGCAGGCAGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGCACAGGa > 1:548089/1‑140 (MQ=255) cccTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGCACAGGAACAgcg < 2:819121/146‑1 (MQ=255) cccTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGCACAGGAACAgcg > 1:819121/1‑146 (MQ=255) cccTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGCACAGGAACAGCGCAAt > 1:694618/1‑150 (MQ=255) | GGCAGGCGCGGTAAGCCCTGGCATCGGGCAGCACCTGGATCGCTTCGGGGGCCATGGCGTAGCCTGGCAAGCCCGCCAGCATGGTTTCGGGGTTCACTGACGCTCACCTTCTCTGTGCAATCACTGTCGGCCCTGCCTGCCGGCGGGGCCATTCCTGGCCGCTGCATCCGGGGTGTATGATCGACCCGGCAACGACCCATAACAACAAGAACCACGCGAGGCTCTGCTTTCTCACTGCCCCTGACCAACCAGGCCTCAGCTTGCACAGGAACAGCGCAAT > NC_002947/4163409‑4163688 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |