| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,915,793 | C→T | 16.3% | G114S (GGC→AGC) | ccmC ← | protoheme IX reservoir complex subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,915,793 | 0 | C | T | 16.3% | 89.1 / 11.8 | 43 | G114S (GGC→AGC) | ccmC | protoheme IX reservoir complex subunit |
| Reads supporting (aligned to +/- strand): ref base C (20/16); new base T (4/3); total (24/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.61e-01 | |||||||||||
ACAGGCCTTGGCCGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGCATCGCCGCCGGCA > NC_002947/4915647‑4915942 | acaGGCCTTGGCCGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGt > 2:713606/1‑150 (MQ=255) gggCCTTGGCCGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCTGGtta > 1:609191/2‑148 (MQ=255) gcattGGCCGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAACATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAAcc > 2:296585/4‑150 (MQ=255) gCCTTGGCCGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAAcc < 1:201097/150‑1 (MQ=255) gCCTTGGCCGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAAcc > 2:738345/1‑150 (MQ=255) cTTGGCCGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAg > 2:555573/1‑150 (MQ=255) aCTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCAcggc < 2:650619/150‑1 (MQ=255) tATCACGAGTACTGATCGCCTGGCCCAGCGCAAGAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCAcggcgg < 2:403122/150‑1 (MQ=255) gATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCAGGGACGTAAGACGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGGGGTCATcc > 1:271725/1‑150 (MQ=255) ttACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAg < 1:738345/150‑1 (MQ=255) aTCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCa > 1:280121/1‑150 (MQ=255) gCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGgcgc < 1:831370/150‑1 (MQ=255) aGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCAGGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGCTGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGcc > 1:814124/1‑149 (MQ=255) gcAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCacac > 2:445040/1‑150 (MQ=255) cAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACt > 1:289521/1‑150 (MQ=255) tACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCg < 2:289521/150‑1 (MQ=255) aGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGcc < 1:821201/150‑1 (MQ=255) ggAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCCATGGGCGGGGCAAAAGACAGGAAGACATCGGccg > 2:821201/1‑149 (MQ=255) gAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAg > 1:526203/1‑150 (MQ=255) aCAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGtt > 2:9256/1‑150 (MQ=255) aGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCcac < 1:200344/150‑1 (MQ=255) cATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCTAGGTCGTCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCacac < 2:271725/150‑1 (MQ=255) aTGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGACGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACAcc > 2:616090/1‑150 (MQ=255) ggCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCccacca < 1:307520/150‑1 (MQ=255) gCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACNCTGNAGGGNGACGTCGGCCAGTTTCATCTTCCACACCAGCCCcaccac < 1:713606/150‑1 (MQ=255) tcATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATAGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCg > 2:531584/2‑150 (MQ=255) ccaccaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCcca > 1:710371/1‑131 (MQ=255) ccaccaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCcca < 2:710371/131‑1 (MQ=255) ccaccaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCcag > 1:36664/1‑150 (MQ=255) ccaccaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCcag > 2:812449/1‑150 (MQ=255) caccaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCTTTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCATCCCCACCACCCCGGCCACCGCcatc < 2:814124/150‑3 (MQ=255) caccaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTc > 1:622695/1‑111 (MQ=255) caccaGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTc < 2:622695/111‑1 (MQ=255) gCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATa < 1:9256/150‑1 (MQ=255) cAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAg < 1:528650/150‑1 (MQ=255) cTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTT‑CACACCAGCCCCACCACCCCGGCCACCGGCAGCAGCACATAGCAGGACTGCGcc > 1:451796/1‑150 (MQ=255) ccccAGATGGCGCCGGTAACCAGCGACACGGCGGTCATCCAGGGGCCAATTAATTCAGGACACTGCAGTTCTACGTCGACCATTGTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGc > 2:524826/1‑150 (MQ=255) gccgtGGCGCTGGTTACCGGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCa > 1:19405/5‑145 (MQ=255) gccgtGGCGCTGGTTACCGGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCa < 2:19405/141‑1 (MQ=255) gtGGCGCTGGTTACCGGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTc > 2:794450/2‑81 (MQ=38) gtGGCGCTGGTTACCGGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTc > 2:794481/2‑81 (MQ=38) gtGGCGCTGGTTACCGGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTc < 1:794450/80‑1 (MQ=38) gtGGCGCTGGTTACCGGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTc < 1:794481/80‑1 (MQ=38) cGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGCATCGCCGCCGGca < 2:280121/150‑1 (MQ=255) | ACAGGCCTTGGCCGCACTATCACGATTACTGATCGCCTGGCCCAGCGCAATAATGCCGAAGTACAGGAACAGCAGGATGAGCATGGACGTAAGGCGGGCATCCCACACCCACCAGCTGCCCCAGGTCGGCTTGCCCCAGATGGCGCCGGTAACCAGCGCCACGGCGGTCATCCAGGCGCCAATGGGCGCGGCACACTGCAGGGCGACGTCGGCCAGTTTCATCTTCCACACCAGCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGCATCGCCGCCGGCA > NC_002947/4915647‑4915942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |