| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,141,748 | T→C | 14.6% | V12A (GTG→GCG) ‡ | PP_4526 → | MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,141,748 | 0 | T | C | 14.6% | 95.0 / 8.3 | 41 | V12A (GTG→GCG) ‡ | PP_4526 | MFS transporter |
| Reads supporting (aligned to +/- strand): ref base T (20/15); new base C (3/3); total (23/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.73e-01 | |||||||||||
CTGAATTCCACGGCATTCTCCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTGGGCGCGGTG > NC_002947/5141599‑5141890 | cTGAATTCCACGGCATTCTCCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGt < 2:82691/150‑1 (MQ=255) cACGGCATTCTCCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCtga > 2:569378/1‑150 (MQ=255) cACGGCATTCTCCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCtga > 1:667355/1‑150 (MQ=255) cACGGCATTCTCCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCACGGCGCtgg < 2:383301/150‑2 (MQ=255) cATTCTCCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACATGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGatgatg < 2:337171/150‑1 (MQ=255) tcCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCt > 2:332243/1‑138 (MQ=255) tcCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCt < 1:332243/138‑1 (MQ=255) cAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATgg < 1:364438/150‑1 (MQ=255) aaaaCAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATggg > 1:733730/1‑150 (MQ=255) aaaaCAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATggg > 1:491610/1‑150 (MQ=255) aaCAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCa > 2:125786/1‑150 (MQ=255) acTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGtt < 1:793066/150‑1 (MQ=255) ttGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTc > 1:208887/1‑150 (MQ=255) atcatTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTc > 2:319423/1‑150 (MQ=255) aaTTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATggg > 1:171905/1‑121 (MQ=255) aaTTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATggg < 2:171905/121‑1 (MQ=255) gAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCccgcaactgccgcaac < 1:319423/150‑1 (MQ=255) gAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCccgcaactgccgcaac > 1:809186/1‑150 (MQ=255) aCCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGACAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCg > 1:274907/1‑150 (MQ=255) cGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAg > 1:218845/1‑150 (MQ=255) cccTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCACGGCGCtggc > 2:463598/1‑85 (MQ=255) cccTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCACGGCGCtggc < 1:463598/87‑3 (MQ=255) ccATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGAc < 2:667355/150‑1 (MQ=255) cggttACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGt < 2:42445/147‑1 (MQ=255) accgccgcAGGGGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCgctg > 2:672922/6‑150 (MQ=255) aCCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCgctg < 2:694859/150‑1 (MQ=255) ccTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCgctgg < 2:274907/150‑1 (MQ=255) cTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCgctggg > 2:578157/1‑150 (MQ=255) cATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCaa < 1:672922/150‑1 (MQ=255) aTGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGc > 2:655515/1‑108 (MQ=255) aTGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGc < 1:655515/108‑1 (MQ=255) gCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCt > 2:718130/1‑150 (MQ=255) aCTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTggg < 1:569378/150‑1 (MQ=255) aTTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGCCGGAAACGGGGCTGGTCGCGGCGGCCAATTACCTGGGCTAt > 1:44916/1‑150 (MQ=255) tCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTAttt > 1:711577/1‑150 (MQ=255) aaCTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCg > 1:132355/1‑150 (MQ=255) aaCTGCTCGCCAGCGCCGTGGCGCTGATGATGACCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCg > 1:839611/1‑150 (MQ=255) gCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTggg < 2:132355/150‑1 (MQ=255) atcatcAGCGCCACGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTGGgc > 2:196368/6‑150 (MQ=255) tcatcAGCGCCACGGCGCTGGTGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCCATTTCGTGGgcg > 2:171820/5‑150 (MQ=255) cAGCGCCACGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTGGGCGCGGt < 1:196368/150‑1 (MQ=255) aGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCAGCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTGGGCGCGGTg < 2:733730/150‑1 (MQ=255) | CTGAATTCCACGGCATTCTCCAAAACAGAACAACTTGATCATCATTATTCAATTTTATTGAAAAATAAACCGCCCTAACCTGCCATCTATCGCTTACCTGCGCAGGAGACCTGTCATGTCGCCACTCATTCAACTGCTCGCCAGCGCCGTGGCGCTGATGATGGCCATGGGCATCGGCCGTTTCGCCCTCACCCCGCAACTGCCGCAACTGATTGCCGAGGGCCAGTTCGACCTGACAGTCGCTGGGCTGGTCGCGGCGGCCAATTACCTGGGCTATTTCGTGGGCGCGGTG > NC_002947/5141599‑5141890 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |