| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,338,680 | G→A | 11.8% | noncoding (356/395 nt) | PP_mr53 → | CrcZ ncRNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,338,680 | 0 | G | A | 11.8% | 104.4 / 4.0 | 43 | noncoding (356/395 nt) | PP_mr53 | CrcZ ncRNA |
| Reads supporting (aligned to +/- strand): ref base G (18/19); new base A (3/2); total (21/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 | |||||||||||
AGCGGCCAAAGCAATCCGTTTGCTCTTTACCCCCGGTTTGGGGGTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATTCTCCTATTCTTGGCCGAACATTCCTTCACACAGTGCATCCCATGCTG > NC_002947/5338536‑5338826 | aGCGGCCAAAGCAATCCGTTTGCTCTTTACCCCCGGTTTGGGGGTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTcc > 2:293268/1‑150 (MQ=255) gCGGCCAAAGCAATCCGTTTGCTCTTTACCCCCGGTTTGGGGGTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTccc > 2:19958/1‑150 (MQ=255) ggCCAAAGCAATCCGTTTGCTCTTTACCCCCGGTTTGGGGGTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCt < 2:504805/150‑1 (MQ=255) tctTTACCCCCGGTTTGGGGGTCATCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTgg > 2:711784/1‑150 (MQ=255) tctTTACCCCAGGTTTGGGGGTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAAAAGAAAAAAAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTgg < 2:421118/150‑1 (MQ=255) tttACCCCCGGTTTGGGGGTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTggca < 1:19958/150‑1 (MQ=255) tttACCCCCGGTTTGGGGGTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTggca > 2:668441/1‑150 (MQ=255) cccccGGTTTGGGGGTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTggcaggca > 2:46654/1‑150 (MQ=255) ccccGGTTTGGGGGTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCAt > 2:186473/1‑150 (MQ=255) tttGGGGGTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACACGGAGAATAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCt > 1:700825/1‑150 (MQ=255) ggTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGtt < 1:173341/118‑1 (MQ=255) ggTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGtt > 2:173341/1‑118 (MQ=255) ggTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGc > 2:341988/1‑150 (MQ=255) tcCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTaca < 1:46654/150‑1 (MQ=255) acaAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTc < 1:16716/107‑1 (MQ=255) acaAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTc > 2:16716/1‑107 (MQ=255) aGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTc < 1:711784/150‑1 (MQ=255) cTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTccc < 1:10846/150‑1 (MQ=255) ttCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTcccc < 1:341988/150‑1 (MQ=255) ttCGAGATTTGTGGACAGAGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGAGAGCTTACGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTcccc < 1:796311/150‑1 (MQ=255) cGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGa < 2:793193/150‑1 (MQ=255) cGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGa < 1:129165/150‑1 (MQ=255) tttGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACACGCCTACACCATTCCCCGAGTaaa < 1:186473/150‑1 (MQ=255) gACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAg > 1:99244/1‑150 (MQ=255) gggCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATc > 1:34295/1‑150 (MQ=255) aaCAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGc > 1:110719/1‑150 (MQ=255) cAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCgg < 2:99244/150‑1 (MQ=255) ccAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCAt > 2:525672/1‑104 (MQ=255) ccAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCAt < 1:525672/104‑1 (MQ=255) ccAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATtctc < 2:110719/150‑1 (MQ=255) aaGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATTCTcc < 2:700825/149‑1 (MQ=255) aaaaCAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATTCTCCTATTCtt < 1:698136/150‑1 (MQ=255) aaCAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATTCTCCTATTCTTgg > 1:260325/1‑150 (MQ=255) aTAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATTCTCCTATTCtt > 2:497036/1‑144 (MQ=255) aTAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATTCTCCTATTCtt < 1:497036/144‑1 (MQ=255) tAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATccc > 2:32716/1‑113 (MQ=255) tAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATccc < 1:32716/113‑1 (MQ=255) acgacaaggggAGCCTAAGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATTCTCCTATTCTTGGCCGAACATTCCTTc < 1:719269/137‑1 (MQ=255) acgacaaggggAGCCTAAGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATTCTCCTATTCTTGGCCGAACATTCCTTc > 2:719269/8‑144 (MQ=255) gacaaggggAGCCTAAGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATTCTCCTATTCTTGGCCGAACATTCCTTCACACAGTg > 2:683381/6‑150 (MQ=255) ggggAGCCTAAGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCAGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCa > 2:792838/1‑108 (MQ=255) ggggAGCCTAAGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCAGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCa < 1:792838/108‑1 (MQ=255) ttAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATTCTCCTATTCTTGGCCGAACATTCCTTCACACAGTGCATCCCATGCTg > 1:536459/1‑150 (MQ=255) | AGCGGCCAAAGCAATCCGTTTGCTCTTTACCCCCGGTTTGGGGGTCGTCCACAAGCTTCGAGATTTGTGGACAGGGCACTCAACAAAAACAAGAAGCCCAGCAAAAAAACAATAAGAGCACGCAACGACTTCTTGGGGAGCTTAGGCTCCCCTTGTCGTTTCTACCCTTCTGGCAGGCATCCTGCTACCCGCCTACACCATTCCCCGAGTAAATGCTAGAATCCCCGCCCATCATGCGGCCATTCTCCTATTCTTGGCCGAACATTCCTTCACACAGTGCATCCCATGCTG > NC_002947/5338536‑5338826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |