| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,610,048 | C→A | 100% | S173I (AGC→ATC) | PP_4929 ← | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,610,048 | 0 | C | A | 100.0% | 133.7 / NA | 40 | S173I (AGC→ATC) | PP_4929 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (20/20); total (20/20) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GCCTCGCCGCCGGGGTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAG > NC_002947/5609916‑5610188 | gcctcgccGCCGGGGTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGGGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGgcgc > 1:829714/1‑150 (MQ=255) cGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGc > 1:785701/1‑150 (MQ=255) tttGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCg < 2:757444/141‑1 (MQ=255) tttGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCg > 1:757444/1‑141 (MQ=255) tttGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCttt < 1:340403/150‑1 (MQ=255) ttgttgTGGCGTGATCAGCAACTGCCGGTGGCGGGCCACTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTc < 1:225215/150‑1 (MQ=255) ttgtGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGa < 2:799289/140‑1 (MQ=255) ttgtGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGa > 1:799289/1‑140 (MQ=255) gtgGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCAGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTgga < 2:656648/150‑1 (MQ=255) tgGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTggag > 1:32844/1‑150 (MQ=255) gATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTgga > 1:386861/1‑143 (MQ=255) gATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTgga < 2:386861/143‑1 (MQ=255) gggCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGcgcc > 2:89060/1‑150 (MQ=255) gggCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGCTGGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGcgcc > 1:649465/1‑150 (MQ=255) gCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGgcgcgcaag > 2:152845/1‑147 (MQ=255) aaTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGTAAGAACAGGCCCAGATCGGCGCGCCGCTcc < 1:413036/150‑1 (MQ=255) ttgttgGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGGGCCTCTccac < 2:32844/150‑1 (MQ=255) ggCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCt > 2:467423/1‑150 (MQ=255) gCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCtt > 2:481826/1‑150 (MQ=255) gTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTgcgc > 1:136197/1‑150 (MQ=255) cGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTgcgc < 2:267488/144‑1 (MQ=255) cGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTgcgc > 1:267488/1‑144 (MQ=255) cTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGc > 1:249257/1‑150 (MQ=255) ccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTc < 2:136197/150‑1 (MQ=255) gggTGGCCGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTg < 1:481826/150‑1 (MQ=255) cGACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGC‑CCAAGGAAACCCGGATGCCTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCCCCACCAGCTTGCGCGCCACATCGCCCCTGGCTCCCCCTGCCAGTTg > 2:280510/1‑150 (MQ=255) gACCGCGCACACCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTg < 2:615056/150‑1 (MQ=255) cacaCCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTcc < 1:235959/150‑1 (MQ=255) cacCGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAg < 2:542996/150‑1 (MQ=255) cGTGACCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGaa < 2:249257/150‑1 (MQ=255) aCCATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACggg < 2:771052/150‑1 (MQ=255) ccATCTCCACGATGCCCAACGCACGGCGC‑CCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTa < 1:280510/150‑1 (MQ=255) cATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTa > 2:131232/1‑150 (MQ=255) cATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTa > 1:789953/1‑150 (MQ=255) cATCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTa > 2:151829/1‑150 (MQ=255) aTCTCCACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAg < 2:829714/150‑1 (MQ=255) cACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACgg > 1:68338/1‑141 (MQ=255) cACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACgg < 2:68338/141‑1 (MQ=255) cACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACg > 2:112333/1‑140 (MQ=255) cACGATGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACg < 1:112333/140‑1 (MQ=255) | GCCTCGCCGCCGGGGTAACCGCTTTGTTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAG > NC_002947/5609916‑5610188 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |