Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,618,370 | A→C | 8.3% | L111L (CTT→CTG) | wzy ← | O‑antigen polymerase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,618,370 | 0 | A | C | 8.3% | 132.1 / 4.9 | 48 | L111L (CTT→CTG) | wzy | O‑antigen polymerase |
Reads supporting (aligned to +/- strand): ref base A (20/24); new base C (2/2); total (22/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.36e-01 |
AGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAGGCCAACAGCAGCAGCACACTCCCCCACAGCGCCGGTT > NC_002947/5618221‑5618518 | aGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCa > 1:37737/1‑150 (MQ=255) gggTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTgg < 2:814443/150‑1 (MQ=255) gTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGc < 1:523180/150‑1 (MQ=255) cctcGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCg < 2:588225/149‑1 (MQ=255) tcGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGa > 1:423734/1‑150 (MQ=255) gATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGc < 1:697366/150‑1 (MQ=255) cGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGAAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGTCAACAGc < 1:201770/136‑1 (MQ=255) cGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGAAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGTCAACAGc > 2:201770/1‑136 (MQ=255) gCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAAc > 2:587103/1‑141 (MQ=255) gCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAAc < 1:587103/141‑1 (MQ=255) aaCAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAgg < 2:37737/150‑1 (MQ=255) gCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCg < 2:592298/123‑1 (MQ=255) gCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCg > 1:592298/1‑123 (MQ=255) cAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAACAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTgg < 2:786570/112‑1 (MQ=255) cAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAACAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTgg > 1:786570/1‑112 (MQ=255) cACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAgc > 1:748236/1‑150 (MQ=255) gCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGa < 2:500950/150‑1 (MQ=255) cACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAg > 2:576784/1‑150 (MQ=255) cccATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTc > 2:718295/1‑150 (MQ=255) cATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTcgc > 1:587199/1‑150 (MQ=255) aaCTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATg < 1:268702/150‑1 (MQ=255) cTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGACAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTCAGCTCGCGCATggg < 2:86991/150‑1 (MQ=255) ttGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGc > 1:552516/1‑150 (MQ=255) tgatgGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCtt > 1:210333/1‑130 (MQ=255) tgatgGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCtt < 2:210333/130‑1 (MQ=255) atgGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTcg < 1:243526/150‑1 (MQ=255) ggAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTcggc > 2:733870/1‑150 (MQ=255) gCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATACCTTAGGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCAt < 1:437772/150‑1 (MQ=255) cGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCa < 1:445790/150‑1 (MQ=255) gATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATgg < 2:389783/125‑1 (MQ=255) gATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATgg > 1:389783/1‑125 (MQ=255) agcagcGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGc < 1:718295/150‑1 (MQ=255) cTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAg < 1:733870/150‑1 (MQ=255) aaGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAGGCCaa > 2:406491/1‑150 (MQ=255) gcagcaATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCcagcag < 1:14155/61‑1 (MQ=255) gcagcaATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCcagcag > 2:14155/1‑61 (MQ=255) cagcaATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAGGCCAAcag < 2:423734/150‑1 (MQ=255) gcaATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAGGCCAAcagca < 1:576784/150‑1 (MQ=255) caATAACTGACGAATGAGGGCTTGGCCAAGATGGGCCAACAGCGGAAACGCCAGCAGGACCAACAGGATGTAGCGCAAGCGATTGAGCTCGCGCATGGGCTACAAGGCGGGCGACCCTGCCAGGATCAGCCCGCTCCAGGCCAAcagccg > 2:601645/1‑148 (MQ=255) aaCTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAGGCCAACagcagcagc < 2:748236/150‑1 (MQ=255) gggCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAGGCCAACAGCAGCAGCACACTCCCCcaca > 2:770231/1‑150 (MQ=255) gggCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAGGCCAACAGCAGCAGCACACTCCCCcaca > 2:770277/1‑150 (MQ=255) tgttGGCCCAGCTTGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGa < 2:518122/65‑1 (MQ=38) tgttGGCCCAGCTTGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGa > 1:518121/3‑67 (MQ=38) tgttGGCCCAGCTTGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGa < 2:518121/65‑1 (MQ=38) tgttGGCCCAGCTTGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGa > 1:518122/3‑67 (MQ=38) ccAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAGGCCAACAGCAGCAGCACACTCCCCCACAGCGCCGGt > 1:209199/1‑150 (MQ=255) cAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAGGCCAACAGCAGCAGCACACTCCCCCACAGCGCCGGtt < 2:209199/150‑1 (MQ=255) cAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAGGCCAACAGCAGCAGCACACTCCCCCACAGCGCCGGtt > 1:840272/1‑150 (MQ=255) | AGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGATGGCCAGCAGCGCGCTGCCAAGCAGCAATAACTGACGAATGCGGGCTTGGCCAAGCTGGGCCAACAGCGGAAACGCCAGCAGGAACACCAGGATGTAGAGCAAGCGCTTGAGCTCGCGCATGGGCTCCTCGGCGGGCGACCATGCCAGGCTCAGCCCGCTCCAGGCCAACAGCAGCAGCACACTCCCCCACAGCGCCGGTT > NC_002947/5618221‑5618518 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |