| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,887,120 | C→A | 8.0% | intergenic (‑49/‑81) | PP_5161 ← / → PP_5162 | lysophospholipase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,887,120 | 0 | C | A | 8.0% | 149.8 / 2.2 | 50 | intergenic (‑49/‑81) | PP_5161/PP_5162 | lysophospholipase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (25/21); new base A (2/2); total (27/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01 | |||||||||||
GAAAGGCAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGGCGCCGTAATCCTCT > NC_002947/5886981‑5887267 | gAAAGGCAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTc > 1:108757/1‑150 (MQ=255) gCAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCcaca > 2:219183/1‑150 (MQ=255) cAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAg < 2:768231/150‑1 (MQ=255) aGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGTGGGAGCGGCCTTGCGTCG‑CGAAAGGCCGCTcccgcaat < 1:790645/150‑6 (MQ=38) gggCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGTGGGAGCGGCCTTGCG‑TCGCGAAAGGCCGCTCCcgcaattag > 2:519014/1‑145 (MQ=37) ggCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATc > 1:545066/1‑150 (MQ=255) gTACATCCACATTGAGGCAAGTATCGATATGTAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAg < 2:108757/150‑1 (MQ=255) ccACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGCACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTa < 2:613202/150‑1 (MQ=255) cacaTTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGACGCCAGCGTCAGGGATCGGCGCCAGCTTTTaa > 2:108588/1‑149 (MQ=255) acaTTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGa < 2:545066/150‑1 (MQ=255) aTTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCAACTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAgg > 1:50244/1‑128 (MQ=255) aTTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCAACTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAgg < 2:50244/128‑1 (MQ=255) ttGATGCAATTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCAGCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAAt < 1:338112/150‑1 (MQ=255) ggAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTc > 2:482666/1‑150 (MQ=255) tCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGgc > 1:669388/1‑111 (MQ=255) tCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGgc < 2:669388/111‑1 (MQ=255) cAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTc > 1:436031/1‑142 (MQ=255) cAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTc < 2:436031/142‑1 (MQ=255) tctGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCAc < 1:482666/150‑1 (MQ=255) tctGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCAc > 2:592808/1‑150 (MQ=255) gCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGAc > 1:654760/1‑150 (MQ=255) cGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAGTTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGActc > 1:817442/1‑150 (MQ=255) gcCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTGCGTCG‑CGAAAGGCCGCTccc < 1:822883/81‑1 (MQ=21) gcCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTGCGTCG‑CGAAAGGCCGCTccc > 2:822883/1‑81 (MQ=21) gCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATa < 1:219183/150‑1 (MQ=255) aaGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTc > 1:579134/1‑71 (MQ=255) aaGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTc < 2:579134/71‑1 (MQ=255) tCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGcc > 2:383262/1‑143 (MQ=255) tCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGcc < 1:383262/143‑1 (MQ=255) tCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTACTCCAGTAAGGGCCACCGACTCTTCATGAATAGCCGAatcat > 1:261965/1‑150 (MQ=37) tCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACCCACGGCCGGTCTACCGCGCCACGGCCGGAGCCTACGGAAATTTAACAACGCTGTTTCGTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAatcat > 2:736481/1‑150 (MQ=255) aCCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAg > 2:390910/1‑95 (MQ=255) aCCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAg < 1:390910/95‑1 (MQ=255) aCCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGAACACACCAAAACGTTGGAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCGCCGACTCTTCATGAATAGCCGAAtcatca > 2:839859/1‑150 (MQ=255) cTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCCCAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCaaa > 2:327415/1‑150 (MQ=255) gAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCTAAGCATCAAACCg > 1:390425/1‑150 (MQ=255) agccAGCGTCGAACTACTCGCGGGCGCGGCCTTTCG‑CGCCCCCAGGCCGTCCCAACAGGGATCGGCGCCAGCTTTTAGAAATTGGGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCtgt < 2:817442/148‑1 (MQ=255) cAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCa > 1:82664/1‑150 (MQ=255) gCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACg < 2:492035/150‑1 (MQ=255) aTCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAg > 1:479787/1‑123 (MQ=255) aTCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAg < 2:479787/123‑1 (MQ=255) aTCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGt > 1:335406/1‑150 (MQ=255) gAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCAt > 1:547120/1‑150 (MQ=255) aTTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAatcat < 2:767219/123‑1 (MQ=255) aTTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAatcat > 1:767219/1‑123 (MQ=255) ttGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAgg < 1:327246/91‑1 (MQ=255) ttGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAgg > 2:327246/1‑91 (MQ=255) cGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGgc < 1:592808/150‑1 (MQ=255) tttCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCAgcgaccc < 2:82664/150‑5 (MQ=255) cGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGGCGCCGTAATCctct < 2:390425/150‑1 (MQ=255) | GAAAGGCAGGGGGCATCGGGTACATCCACATTGATGCAAGTATTGATCTGGAATCTTCAGCTCTGGCCGGCGCCATGGCAAGCTTGCTCACCTCGAACAACCAGCATCGAACTAATTGCGGGAGCGGCCTTTCG‑CGACGCAAGGCCGCTCCCACAGGGATCGGCGCCAGCTTTTAGAAATTGAGCAAGACAGTTGCTTCCACAAGGGCCACCGACTCTTCATGAATAGCCGAATCATCAAACCGCTGTGCACGGTCATCGCCTTGTTGGTCGGCGCCGTAATCCTCT > NC_002947/5886981‑5887267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |