| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,006,613 | T→G | 18.3% | intergenic (+25/+74) | ydcJ → / ← PP_5261 | metalloprotein/LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,006,613 | 0 | T | G | 18.3% | 33.1 / 6.4 | 22 | intergenic (+25/+74) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (9/9); new base G (2/2); total (11/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.83e-01 | |||||||||||
ACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGC > NC_002947/6006467‑6006762 | aCCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGC > 1:128692‑M1/1‑150 (MQ=255) cGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGGGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCGCTTCGCGGGCTCGCCCGCTCCCA < 2:267470‑M1/150‑1 (MQ=255) tCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAG < 2:794442‑M1/150‑1 (MQ=255) gggTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCGAGCCCGCgaa > 1:237845‑M1/1‑128 (MQ=255) gggTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCGAGCCCGCgaa < 2:237845‑M1/131‑4 (MQ=255) ggTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgg > 2:804188‑M2/1‑142 (MQ=255) cAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTcgtatgccctgtacctgtgg < 2:623977‑M1/146‑21 (MQ=255) cAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTcgtatgccctgtacctgtgg > 1:623977‑M1/1‑126 (MQ=255) ggATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgg > 1:684890‑M2/1‑136 (MQ=255) gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTcgtatgccctgtacctgtgggagcgggcga < 1:303379‑M1/150‑31 (MQ=255) gcTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCGAGCCCGCgaag > 1:389574‑M1/1‑102 (MQ=255) gcTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCGAGCCCGCgaag < 2:389574‑M1/106‑5 (MQ=255) tGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACA > 1:390762‑M1/1‑103 (MQ=255) tGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACA < 2:390762‑M1/103‑1 (MQ=255) aaaGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAgg > 2:198808/1‑106 (MQ=255) aaaGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAgg < 1:198808/106‑1 (MQ=255) cTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGGGCCCGCGAAAAGCCCCGTGCAGGTGATCAAAGACGCGGCAGGAt > 2:472660/1‑150 (MQ=255) tgtgCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCC > 1:383587‑M1/1‑62 (MQ=255) tgtgCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCC < 2:383587‑M1/62‑1 (MQ=255) acaGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTcgtatgccctgtacctgtg < 2:289490‑M1/89‑20 (MQ=255) acaGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTcgtatgccctgtacctgtg > 1:289490‑M1/1‑70 (MQ=255) ctctTCGCGGGCTCGCCCGCTCCCACAGGTACAGGCCTCGCTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAAc < 1:472660/150‑1 (MQ=38) tCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctc < 1:303379‑M2/150‑121 (MQ=255) | ACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGC > NC_002947/6006467‑6006762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |