| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,037,521 | C→T | 16.0% | G191G (GGC→GGT) | argB → | acetylglutamate kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,037,521 | 0 | C | T | 16.0% | 51.4 / 4.4 | 25 | G191G (GGC→GGT) | argB | acetylglutamate kinase |
| Reads supporting (aligned to +/- strand): ref base C (10/11); new base T (2/2); total (12/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.78e-01 | |||||||||||
GACGCCTGAGATGACCACTCCGGAAATCATCGACATCGGCCACGTGGGCGAAGTGGTGAGCGTGAACACCGACCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAGCGCTGAAGGCCGAGAAGCTGATGCTTCTGACCAACATCGCCGGCCTGATGGACAAGCAGGGCCAGGTGCTGACTGGCCTGACCACCGAGCAG > NC_002947/6037380‑6037662 | gACGCCTGAGATGACCACTCCGGAAATCATCGACATCGGCCACGTGGGCGAAGTGGTGAGCGTGAACACCGACCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTa < 2:595281/150‑1 (MQ=255) aCGCCTGAGATGACCACTCCGGAAATCATCGACATCGGCCACGTGGGCGAAGTGGTGAGCGTGAACACCGACCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTac < 1:542822/150‑1 (MQ=255) ccTGAGATGACCACTCCGGAAATCATCGACATCGGCCACGTGGGTGAAGTGGTGAGCGTGAACACCGACCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTacaac < 2:616799/150‑1 (MQ=255) cGGAAATCATCGACATCGGCCACGTGGGCGAAGTGGTGAGCGTGAACACCGACCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTtg > 1:528747/1‑149 (MQ=255) cGGAAATCATCGACATCGGCCACGTGGGCGAAGTGGTGAGCGTGAACACCGACCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTtg < 2:528747/149‑1 (MQ=255) atcGACATCGGCCACGTGGGCGAAGTGGTGAGCGTGAACACCGACCTGATGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGc > 2:631470/1‑150 (MQ=255) ggtgAGCGTGAACACCGACCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAGCGCTGAAGGCCga < 1:567158/150‑1 (MQ=255) gtgAGCGTGAACACCGACCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGaa < 1:184482/135‑1 (MQ=255) gtgAGCGTGAACACCGACCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGaa > 2:184482/1‑135 (MQ=255) acCGACCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAGCGCTGAAGGCCGAGAAGCTGATGCtt > 1:334272/1‑150 (MQ=255) aCCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAGCGCTGaa > 2:720965/1‑127 (MQ=255) aCCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAGCGCTGaa < 1:720965/127‑1 (MQ=255) gctgAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAGCGCTGAAGGCCGAGAAGCTGATGCTTCTGACCaa < 1:711158/150‑1 (MQ=255) cTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCTACGCCGACTTGGTGGAGGGCAAGGTGGCCGAAGCGCTGAAGGCCGAGAAGCTGATGCTTCTGACCAACATCGCCGGc > 2:134623/1‑150 (MQ=255) gggCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGTGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAg > 2:34356/1‑98 (MQ=255) gggCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGTGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAg > 2:35048/1‑98 (MQ=255) gggCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGTGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAg < 1:35048/98‑1 (MQ=255) gggCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGTGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAg < 1:34356/98‑1 (MQ=255) gggCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCaa < 1:634396/87‑1 (MQ=255) gggCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTAGTACAACATCAACGCCGACTTGGTGGCGGGCaa > 2:634396/1‑87 (MQ=255) ttCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAGCGCTGAAGGCCGAGAAGCTGATGCTTCTGACCAACATCGCCGGCCTGATGGACAAGCAg > 2:442961/1‑150 (MQ=255) cATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAGCGCTGAAGGCCGAGAAGCTGATGCTTCTGACCAACATCGCCGGCCTGATGGACAAGCAggg < 1:414772/150‑1 (MQ=255) cGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAGCGCTGAAGGCCGAGAAGCTGATGCTTCTGACCAACATCGCCGGCCTGATGGACAAGCAGGGCCAgg > 2:522637/1‑150 (MQ=255) tCGGCGTGGGTGCCAATGGCGAGTCGTACGACATCAACGCCGACTTGGTGGCGGGCAAGGAGGCCGAAGAGCTGAAGGCCGAGAAGCTGATGCTTCTGACCAACCTCGCTGGCCTGATGGTCAAGCAGGCCCAGGTGCTGACTGGACTGa > 2:510681/1‑150 (MQ=255) gCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAGCGCTGAAGGCCGAGAAGCTGATGCTTCTGACCAACATCGCCGGCCTGATGGACAAGCAGGGCCAGGTGCTGACTGGCCTGACCACCGAGCAg < 1:442961/150‑1 (MQ=255) | GACGCCTGAGATGACCACTCCGGAAATCATCGACATCGGCCACGTGGGCGAAGTGGTGAGCGTGAACACCGACCTGCTGAACATGCTGGTGAAGGGCGACTTCATCCCGGTCATCGCGCCAATCGGCGTGGGTGCCAATGGCGAGTCGTACAACATCAACGCCGACTTGGTGGCGGGCAAGGTGGCCGAAGCGCTGAAGGCCGAGAAGCTGATGCTTCTGACCAACATCGCCGGCCTGATGGACAAGCAGGGCCAGGTGCTGACTGGCCTGACCACCGAGCAG > NC_002947/6037380‑6037662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |