| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,040,850 | T→A | 12.5% | intergenic (+19/+15) | PP_5292 → / ← PP_5293 | catabolite repression control protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,040,850 | 0 | T | A | 12.5% | 123.3 / 11.1 | 48 | intergenic (+19/+15) | PP_5292/PP_5293 | catabolite repression control protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (19/23); new base A (3/3); total (22/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.45e-01 | |||||||||||
TCGGTTCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATAAAC > NC_002947/6040702‑6040991 | tCGGTTCGACTACCAGATCCGCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGGCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGGCGACTATGACTGGACGCTAACCATCTAAAAGGCCATTGGGGCTGCAtt > 2:245249/1‑150 (MQ=255) ttCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAg > 1:256107/1‑150 (MQ=255) cGACTACCAGATCCTCACCCCGGGGCTGCGCCGCTTCGTGCGCAGGGCGGGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATGGTCGACTAGTACTGGAAGCTGATCATCTAAAAGGCCATTGGGGCTTCATTGGAGcc > 2:335912/1‑150 (MQ=255) tACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCaa > 1:14072/1‑150 (MQ=255) aCCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAATGCAGCCCCAAt < 1:439147/150‑1 (MQ=255) aCCAGATCCCCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAAt < 1:591233/150‑1 (MQ=255) ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATg > 1:361807/1‑150 (MQ=255) cAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGACCATTGGGGCTGCAATGCAGcc < 2:210475/143‑1 (MQ=255) cAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGACCATTGGGGCTGCAATGCAGcc > 1:210475/1‑143 (MQ=255) gATCCTCACCCCGGGCCTGCGCCGCTTCCTTCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGtt < 1:211664/150‑1 (MQ=255) ccccGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATc < 2:765428/150‑1 (MQ=255) gcAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGAACTGCCGCTAGATCATCGGGTAGCGa > 2:412374/1‑150 (MQ=255) cAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGAATATGTCTCCAGGCAAACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGAt < 1:149362/150‑1 (MQ=255) naCGCTCGCCTGCCGCGTCAGCCACGCTNCTCCCAGCNTGCACCGCTNATCGTCGACTCTGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATGGGCAGCCAGATCATCGGGTGGCGATa > 1:404175/2‑150 (MQ=255) cGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGACTTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAg > 1:480002/1‑150 (MQ=255) tCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCt > 1:249789/1‑150 (MQ=255) cTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGcc < 2:249789/150‑1 (MQ=255) gcgTCAGCCACGCTTCTCCCAGCATGCACCACTAATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCAt > 1:590466/1‑150 (MQ=255) aCGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGAt > 2:237227/1‑100 (MQ=255) aCGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGAt < 1:237227/100‑1 (MQ=255) gCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCAcc < 1:147060/150‑1 (MQ=255) cAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAATGCAGCCCCAAt < 1:709409/79‑1 (MQ=255) cAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAATGCAGCCCCAAt > 2:709409/1‑79 (MQ=255) cATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGt < 1:61685/107‑1 (MQ=255) cATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGt > 2:61685/1‑107 (MQ=255) aCCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCa < 2:361807/150‑1 (MQ=255) ccGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCaa < 2:105410/150‑1 (MQ=255) cGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCa < 1:370165/61‑1 (MQ=255) cGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCa > 2:370165/1‑61 (MQ=255) cGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAat < 2:214676/150‑1 (MQ=255) gCTAATCTTCCACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGTGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAata < 1:335912/150‑1 (MQ=255) cTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAatat < 2:365116/150‑1 (MQ=255) tcgtcgACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATc > 2:45932/1‑75 (MQ=255) tcgtcgACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATc < 1:45932/75‑1 (MQ=255) gtcgACTATGACTGGACCCCAACCATCTCAAACCCCATTCGAACTGAATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCAc < 2:684354/150‑1 (MQ=255) gACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGTCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCCTTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGt < 2:480002/150‑1 (MQ=255) aCTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTg < 2:256107/150‑1 (MQ=255) tGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAg > 1:199187/1‑150 (MQ=255) gACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGGTCAat > 1:296806/1‑128 (MQ=255) gACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAat < 2:296806/128‑1 (MQ=255) cTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGc < 2:14072/150‑1 (MQ=255) ccATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATTATGATCAATATCATCACTGCCACCGTGAGCATGGCAAAc < 1:412374/150‑1 (MQ=255) cATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACa > 1:77351/1‑150 (MQ=255) cTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCg < 2:175995/63‑1 (MQ=255) cTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCg > 1:175995/1‑63 (MQ=255) aTTGGGGCTGCAATGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGAt > 2:57810/1‑150 (MQ=255) ttGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGGTCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATa > 2:813863/1‑150 (MQ=255) tGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATAAac < 2:293763/146‑1 (MQ=255) tGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATAAac > 1:293763/1‑146 (MQ=255) | TCGGTTCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGCTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATAAAC > NC_002947/6040702‑6040991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |