New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1731232	5 (0.380)	4 (0.390)	4/218	0.9	40.0%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1731268	8 (0.770)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase

CCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACA  >  NC_002947/1731090‑1731372                                                                                                                                               |                                                                                                                                             ccAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACt                                                                                                                                       >  1:263507/1‑150 (MQ=255)           ggTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCGCGCCCGCTCCCACAGGTACTGCACAGctct                                                                                                                             <  2:41143/150‑1 (MQ=255)                      gCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACcggcttggcacaggcgttcagagctgtg                                                                                                                  >  2:255250‑M1/1‑122 (MQ=255)                        tCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACcggcttggcacaggcgttcagagctgtgca                                                                                                                >  1:191939‑M1/1‑120 (MQ=255)                                        tGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACcggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgg                                                                                                <  2:191939‑M1/150‑47 (MQ=255)                                        tGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgg                                                                                                >  2:263507‑M2/1‑140 (MQ=255)                                         gggggACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACcggcttggcacaggcgttcagagctgtgcagtacctgtgggagcggg                                                                                               <  1:255250‑M1/150‑48 (MQ=255)                                                 ccGGGGGAAGGCAAGGCGGGGAAATCTGAGTGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGTGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCTGgtgggagcgggcgtgcccg                                                                                       >  2:103171‑M2/1‑131 (MQ=255)                                                                                ggCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCAGGCACGCGCGCTCCCACAGGTACTGCACAGCTCTGAACGCTTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAAc                                                        <  2:131147/150‑1 (MQ=255)                                                                                                                             cgGGCACGCCCGCTCCCACcagcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcacgcgaatgggccgtgctgcccgaaaccatttgatataagataacgccactcagatttccccgccttgccttcccccgg           >  2:103171‑M1/1‑19 (MQ=255)                                                                                                                                     cccGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgatataagataacgcccctcagatttccccgccttgccttgccccggagtccccc   <  1:255250‑M2/150‑104 (MQ=255)                                                                                                                                      ccGCTCCCACcggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgatataagataacgcccctcagatttccccgccttgccttgccccggagtccccca  >  2:263507‑M1/1‑10 (MQ=255)                                                                                                                                      ccGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGc                                                                                                            >  1:241097/1‑44 (MQ=255)                                                                                                                                      ccGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGc                                                                                                            <  2:241097/44‑1 (MQ=255)                                                                                                                                      ccGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgatataagataacgcccctcagatttccccgccttgccttgccccggagtccccca  <  2:191939‑M2/150‑105 (MQ=255)                                                                                                                                               |                                                                                                                                             CCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACA  >  NC_002947/1731090‑1731372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.