New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6060500	7 (0.540)	6 (0.510)	5/246	0.8	41.0%	intergenic (+80/+101)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	= 6060559	11 (0.940)					intergenic (+139/+42)	PP_5311/PP_5312	signal transduction protein/hypothetical protein

GGTGAACAAGGTGCTCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAAC  >  NC_002947/6060351‑6060646                                                                                                                                                      |                                                                                                                                                   ggtgAACAAGGTGCTCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGC                                                                                                                                                    >  2:157349‑M1/1‑150 (MQ=255)               tCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAacac                                                                                                                                      >  1:11367/1‑150 (MQ=255)                  aggacaagcacatccagatcaagggcaacccggcgctggtgatgtggttccaggggttgatgaaatacctgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCTTGCCCGCGAACACCgg                                                                                                                                   <  1:156423‑M1/31‑1 (MQ=255)                             cTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCgtgcccgcgaaacaagcgacgcggtgca                                                                                                                        >  2:9832‑M1/1‑122 (MQ=255)                                              ttCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCt                                                                                                       >  2:9803/1‑150 (MQ=255)                                                       ggtgatgtggttccaggggttgatgaaatacctgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTGcgcg                                                                                              >  2:156423‑M1/83‑150 (MQ=255)                                                       ccATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTcgcg                                                                                              <  2:41622/150‑1 (MQ=255)                                                         aTGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCgtgcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcggg                                                                                            <  1:109432‑M1/150‑57 (MQ=255)                                                         aTGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCggg                                                                                            >  2:288039/1‑150 (MQ=255)                                                                gcattaagcattaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCgtgcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagccc                                                                                     <  1:9832‑M1/150‑64 (MQ=255)                                                                gcattaagcattaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCgtgcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagccc                                                                                     <  1:157349‑M1/150‑64 (MQ=255)                                                                   ttaagcattaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACgcccgct                                                                                  <  1:261029‑M2/150‑8 (MQ=255)                                                                         gttgatgaaatacctgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTcgcg                                                                                              >  1:157554‑M1/65‑132 (MQ=255)                                                                         gttgatgaaatacctgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTcgcg                                                                                              <  2:157554‑M1/68‑1 (MQ=255)                                                                            aaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCgtgcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagcccgctcc                                                                                <  1:313935‑M1/143‑69 (MQ=255)                                                                            aaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCgtgcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagcccgctcc                                                                                >  2:313935‑M1/1‑75 (MQ=255)                                                                              cacaTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGGTaa                                                                       >  2:135354/1‑150 (MQ=255)                                                                                  atacctgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGcc                                                                                      >  1:29521‑M1/56‑131 (MQ=255)                                                                                  atacctgaaaccaaagaagaaaggctgaagcccgacggggatgatgacgctttacCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGcc                                                                                      <  2:29521‑M1/76‑1 (MQ=255)                                                                                                     tCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACATGTAAAGCGTCATCATCCCCGTCGGGCt                                                >  1:157910/1‑150 (MQ=255)                                                                                                                              gcgATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAgg                       >  2:234967/1‑150 (MQ=255)                                                                                                                                            TGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGTGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAAccc         <  2:185421‑M1/150‑1 (MQ=255)                                                                                                                                              ggAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACgcccgctcccacagtccaaaatcgcgccagctgttagaaattgagcaagacagttgctcccgcaggctatgtgtt              >  2:313935‑M2/1‑68 (MQ=255)                                                                                                                                              ggAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACgcccgctcccacagtccaaaatcgcgccagctgttagaaattgagcaagacagttgctcccgcaggctatgtgtt              <  1:313935‑M2/143‑76 (MQ=255)                                                                                                                                                aGCGGGCgtgcccgcgaaacaagcgacgcggtgcatggcaccggcttcgccggtgttcgcgggcaagcccgctcccacagtccaaaatcgcgccagctgttagaaattgagcaagacagttgctcccgcaggctatgtgttaatgcttaa     <  1:261029‑M1/150‑144 (MQ=255)                                                                                                                                                   gggCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACgcccgctcccacagtccaaaatcgcgccagctgttagaaattgagcaagacagttgctcccgcaggctatgtgttaatgcttaatgc  <  1:9832‑M2/150‑88 (MQ=255)                                                                                                                                                   gggCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACgcccgctcccacagtccaaaatcgcgccagctgttagaaattgagcaagacagttgctcccgcaggctatgtgttaatgcttaatgc  <  1:157349‑M2/150‑88 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GGTGAACAAGGTGCTCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAAC  >  NC_002947/6060351‑6060646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.