New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5288442 =	9 (0.690)	4 (0.390)	4/214	0.9	39.9%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5288536 =	5 (0.490)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B

CGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCG  >  NC_002947/5288407‑5288651                                                                                                                                  |                                                                                                                     cGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCAGGCGTGCCCGCTCCCACAAGTACTACAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACtg                                                                                                  >  1:309336/1‑150 (MQ=255)                                        TCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAACGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGc                                                          <  1:234699‑M1/150‑1 (MQ=255)                                          TTCGCGGCCTTGCACCCAGTCACCTGTACTACAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTg                                                        >  2:309336‑M1/1‑150 (MQ=255)                                                   tcGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAAcgccg                                               <  2:108607‑M1/148‑1 (MQ=255)                                                       ccgctcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGc                                                                   <  1:80450‑M2/51‑1 (MQ=255)                                                       ccgctcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGc                                                                   >  2:80450‑M2/76‑126 (MQ=255)                                                        cgctcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGc                                          >  2:284802‑M2/75‑150 (MQ=255)                                                             CCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATc                                     <  1:44373‑M1/150‑1 (MQ=255)                                                             CCACAAGTACTGCAAAGTCCTTGAAACCTGCGGAATACCTTTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACAGAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGGCTCATAAGCTGCCAACGGCGCCGGAACata                                     <  2:35548‑M1/150‑2 (MQ=255)                                                               ACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGc                                                                   <  2:22291‑M1/118‑1 (MQ=255)                                                               ACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGc                                                                   >  1:22291‑M1/1‑118 (MQ=255)                                                                          aaaGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTtcatc                        <  2:44373/150‑1 (MQ=255)                                                                             ggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATcaca                     <  1:284802‑M2/97‑1 (MQ=255)                                                                             gTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGACCGTGCGAAGCAAAAATTA‑AGAGCACAAGTCTGACATCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATcaca                     >  1:195519/1‑150 (MQ=255)                                                                              tCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACAt                    >  2:27667/1‑150 (MQ=255)                                                                                                tACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCg  <  1:27667/150‑1 (MQ=255)                                                                                                        ttcgcgggcttgcccgcgaagaggccGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAAc                                                   <  1:298282‑M2/67‑1 (MQ=255)                                                                                                                         gaagaggccGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCggg                                 >  1:308503‑M2/10‑94 (MQ=255)                                                                                                                         gaagaggccGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCggg                                 <  2:308503‑M2/85‑1 (MQ=255)                                                                                                                                  |                                                                                                                     CGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGC‑CTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCG  >  NC_002947/5288407‑5288651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.