| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1443111 = | 58 (1.330) | 11 (0.310) | 11/214 | 2.3 | 20.0% | intergenic (‑42/+134) | ghrB/PP_1262 | 2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator |
| ? | NC_002947 | 1443179 = | 41 (1.160) | intergenic (‑110/+66) | ghrB/PP_1262 | 2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGACCTGAAAACCCATCAGGTGCTGATCGCCAACTAAAAAGCTGCTGCAATGCGGGGGCGGACAATGGTAGGTTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1443281‑1443111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGAGTTGCGCAGGT > NC_002947/1443179‑1443324 AGACCTGAAAACCCATCAGGTGCTGATCGCCAACTAAAAAGCTGCTGCAATGCGGGGGCGGACAATGGTAGGTTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAG < 1:156843/150‑1 GAAAACCCATCAGGTGCTGATCGCCAACTAAACAGCTGCTTCAATGCGGGGGCGGACAATGGTAGGTTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGG < 2:913648/150‑1 GAAAACCCATCAGGTGCTGATCGCCAACTAAAAAGCTGCTGCAATGCGGGGGCGGACAATGGTAGGTTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGG < 2:849038/150‑1 GAAAACCCATCAGGTGCTGATCGCCAACTAAAAAGCTGCTGCAATGCGGGGGCGGACAATGGTAGGTTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGG > 2:576861/1‑150 GAAAACCCATCAGGTGCTGATCGCCAACTAAAAAGCTGCTGCAATGCGGGGGCGGACAATGGTAGGTTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGG < 2:315268/150‑1 CATCAGGTGCTGATCGCCAACTAAAAAGCTGCTGCAATGCGGGGGCGGACAATGGTAGGTTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCC > 1:108826/1‑150 TGCTGATCGCCAACTAAAAAGCTGCTGCAATGCGGGGGCGGACAATGGTAGGTTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAG < 2:108826/150‑1 GCTGATCGCCAACTAAAAAGCTGCTGCAATGCGGTGGCGGACAATGGTAGGTTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGG < 1:349886/150‑1 TTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCC > 2:55817/1‑92 TTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCC < 1:55817/92‑1 CCGCTCCTACACACCACCGCCCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGAGACCGGAACAGGCGAAATCAATGGTTATCAACCTACCATTGTCCTCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTC < 2:139919/150‑1 CCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTC > 1:729302/1‑150 CCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTC > 1:139919/1‑150 GCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGG > 1:1038749/1‑142 GCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGG < 2:1038749/142‑1 GCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGC > 2:1046674/1‑108 GCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGC < 1:1046674/108‑1 TACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAAC < 1:637252/55‑1 TACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAAC > 2:637252/1‑55 ACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCC > 2:481523/1‑89 ACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCC < 1:481523/89‑1 GGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCA < 1:509110/75‑1 GGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCA > 2:509110/1‑75 GCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGA < 1:849038/150‑1 CCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGAGTTGCG > 1:1035021/1‑150 CGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGAGTTGCGCAG < 2:156843/150‑1 AAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGAGTTGCGCAGGT > 1:1057100/1‑150 AGACCTGAAAACCCATCAGGTGCTGATCGCCAACTAAAAAGCTGCTGCAATGCGGGGGCGGACAATGGTAGGTTGCTAACCATTGATTTCGCCTGTTCCGGCACCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1443281‑1443111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGAGTTGCGCAGGT > NC_002947/1443179‑1443324 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |