| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5280943 = | 55 (1.260) | 9 (0.250) | 8/214 | 3.0 | 16.1% | intergenic (+28/+110) | trmA/pcaG | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha |
| ? | NC_002947 | 5281029 = | 49 (1.380) | intergenic (+114/+24) | trmA/pcaG | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCTTTGATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5281106‑5280943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGGCTGCTCGATC > NC_002947/5281029‑5281176 CGCTTTGATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTT > 1:374159/1‑150 TTTGATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCC > 1:863931/1‑150 TATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGA < 2:470466/150‑1 GGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCG > 2:863920/1‑119 GGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCG < 1:863920/119‑1 CGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAAT < 1:1054592/125‑1 CGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAAT > 2:1054592/1‑125 ATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGG > 1:236700/1‑81 ATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGG < 2:236700/81‑1 GGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCGAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAA > 1:727106/1‑150 CCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTA > 2:330456/1‑150 CCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGG < 2:851874/136‑1 CCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGG > 1:851874/1‑136 CCGCTCCTACAACGATCTGCGTACACCGACGCCGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCC > 1:476420/1‑82 CCGCTCCTACAACGATCTGCGTACACCGACGCCGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCC < 2:476420/82‑1 CAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAG > 2:81452/1‑135 CAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAG < 1:81452/135‑1 AACGACCGGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCC < 1:330456/150‑1 ttcGCGGGCAAGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGTTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCC < 1:158212/115‑1 CCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGG > 1:874092/1‑150 CCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCG > 2:344753/1‑78 CCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCG < 1:344753/78‑1 GCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCCTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGGCTGCTCGATC > 2:1094103/1‑150 CGCTTTGATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5281106‑5280943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGGCTGCTCGATC > NC_002947/5281029‑5281176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |