| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5947161 = | 42 (0.960) | 15 (0.370) | 12/244 | 2.5 | 28.6% | intergenic (‑97/+109) | ubiD/rho | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho |
| ? | NC_002947 | 5947230 = | 36 (0.890) | intergenic (‑166/+40) | ubiD/rho | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho | |||||
CAAGACCAACGATGAGTTCTTCCTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5947312‑5947161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaagggCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGC > NC_002947/5947230‑5947375 CAAGACCAACGATGAGTTCTTCCTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAG < 2:1095761/150‑1 TGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAG < 1:1058124/121‑1 TGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAG > 2:1058124/1‑121 GCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTC > 2:403563/1‑150 CCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTT > 2:501381/1‑150 CTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTG < 1:403563/150‑1 CTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGATGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACA > 1:1075514/1‑127 CTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGATGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACA < 2:1075514/127‑1 TTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTG > 2:973834/1‑143 TTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTG < 1:973834/143‑1 TTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGATGCAAAGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGG > 2:439157/1‑150 GCTCCTGCACAGGTCGTTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGT > 1:864060/1‑150 GCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGC > 2:1095660/1‑101 GCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGC < 1:1095660/101‑1 CTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCG > 1:875655/1‑150 CTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCG > 2:907863/1‑150 TTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGAT < 2:864060/150‑1 TGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATG < 1:501381/150‑1 CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTGCATCGGGTGC > 1:287858/1‑150 CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCA < 1:951598/115‑1 CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCA > 2:951598/1‑115 CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTG < 2:941335/93‑1 CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTG > 1:941335/1‑93 CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCG < 1:813847/59‑1 CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCG > 2:813847/1‑59 AGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGC < 2:875655/150‑1 CAAGACCAACGATGAGTTCTTCCTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5947312‑5947161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaagggCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGC > NC_002947/5947230‑5947375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |