New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6060487 =	36 (0.820)	12 (0.310)	9/236	3.1	23.7%	intergenic (+67/+114)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6060574 =	45 (1.150)					intergenic (+154/+27)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

ACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAGCTG  >  NC_002947/6060429‑6060717                                                                                                                                                    |                                                                                                                                                acaTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCACT‑GCGTCGCTTGT‑TGCGCGGGCACGCCCGCGCCCACAGGGaaa                                                                                                                                             >  1:329787/1‑150 (MQ=37)  caTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAg                                                                                                                                            >  1:1017653/1‑150 (MQ=255)   aTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGc                                                                                                                                           >  1:641451/1‑150 (MQ=255)   aTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GAGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGc                                                                                                                                           >  1:1031437/1‑150 (MQ=255)      gCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGtc                                                                                                                                        <  2:733856/150‑1 (MQ=255)       ccTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGtca                                                                                                                                       <  2:641451/150‑1 (MQ=255)       ccTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GAGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGtca                                                                                                                                       <  2:1031437/150‑1 (MQ=255)        cTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGtcat                                                                                                                                      >  1:1088279/1‑150 (MQ=255)                    cTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCgg                                                                                                                          <  2:433954/150‑1 (MQ=255)                     tGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCggg                                                                                                                         <  2:1017653/150‑1 (MQ=255)                       tCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCt                                                                                                                       >  1:92857/1‑150 (MQ=255)                            cTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGCCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCCGc                                                                                                                  >  2:385271/1‑150 (MQ=255)                              cAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCt                                                                                                                >  2:936685/1‑150 (MQ=255)                                 tttCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTttc                                                                                                             >  1:101280/1‑150 (MQ=255)                                     tAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGc                                                                                                                        >  1:469414/1‑135 (MQ=255)                                     tAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGc                                                                                                                        <  2:469414/135‑1 (MQ=255)                                      acccgCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCTCC‑GCGTCGCTTGT‑TTCGCCGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTcttctt                                                                                                        <  1:128359/146‑1 (MQ=255)                                         aGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTgg                                                                                                     <  1:936685/150‑1 (MQ=255)                                          gCTGGCGCGATTTGGGACGGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGt                                                                                                    <  2:798732/150‑1 (MQ=255)                                                gcgATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAgg                                                                                              <  2:194753/150‑1 (MQ=255)                                                            tgtgGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTttc                                                                                                             <  1:14536/123‑1 (MQ=255)                                                            tgtgGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTttc                                                                                                             >  2:14536/1‑123 (MQ=255)                                                            tgtgGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAAc                                                                                  >  2:372309/1‑150 (MQ=2)                                                              ggggAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAAccc                                                                                <  2:526948/149‑1 (MQ=255)                                                                ggAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCt                                                                              >  2:531912/1‑150 (MQ=255)                                                                     gggCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAAc                                                                         <  2:573981/150‑1 (MQ=255)                                                                      ggCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAAc                                                                         >  1:968848/1‑149 (MQ=255)                                                                      ggCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAAc                                                                         <  2:968848/149‑1 (MQ=255)                                                                       gCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACca                                                                       <  2:101280/150‑1 (MQ=255)                                                                        cTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACcac                                                                      <  2:686846/150‑1 (MQ=255)                                                                           gCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATc                                                                   <  1:619790/150‑1 (MQ=255)                                                                             ccGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCAc                                                                 >  1:657643/1‑150 (MQ=255)                                                                             ccGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCAc                                                                 >  1:95701/1‑150 (MQ=255)                                                                              cgcgAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGCCATACCGCCCGTCGTACTTTGGCGTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCAcc                                                                >  1:407476/1‑150 (MQ=25)                                                                                     acCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCATCCTTTCTTCTTTGGCTTCAGGTATTTCATCCACCCCTGGAACACCATCACCAGCACCg                                                         >  2:125249/1‑150 (MQ=37)                                                                                            aaGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATccc                                                                                                                                <  1:698892/72‑1 (MQ=255)                                                                                            aaGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATccc                                                                                                                                >  2:698892/1‑72 (MQ=255)                                                                                                      cATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCGTTTCTTCTTTGGTTTCAGGTATTTAAATAAGAAACGGAAGCGGATCACCAGCGCCGGGTTGCCCTTGATCTgg                                        >  1:793811/1‑150 (MQ=255)                                                                                                      cATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTgg                                        <  2:95701/150‑1 (MQ=255)                                                                                                       aTGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGa                                       >  1:948447/1‑150 (MQ=255)                                                                                                       aTGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGa                                       >  2:832437/1‑150 (MQ=255)                                                                                                            cc‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGc                                  <  2:589842/150‑1 (MQ=255)                                                                                                            cc‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCATTTCTGCTTTGGTTTCCGGTATTTCTTTTCCTCGACGTACCACTGCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGc                                  >  1:1070876/1‑150 (MQ=255)                                                                                                                   cGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTcc                            <  2:948447/150‑1 (MQ=255)                                                                                                                             cgcgGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCt                   <  2:92857/150‑1 (MQ=255)                                                                                                                              gcgGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCtt                  <  2:1088279/150‑1 (MQ=255)                                                                                                                                      gCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAAc          >  1:260624/1‑150 (MQ=255)                                                                                                                                        ccGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGc        >  1:574253/1‑150 (MQ=255)                                                                                                                                           cTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAg     >  2:1010831/1‑150 (MQ=255)                                                                                                                                              ccACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCTGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAgctg  >  1:1007336/1‑150 (MQ=255)                                                                                                                                                acaGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACca                                                                       >  1:994518/1‑79 (MQ=255)                                                                                                                                                acaGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACca                                                                       <  2:994518/79‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                ACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCTTGT‑TTCGCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTGCCCTTGATCTGGATGTGCTTGTCCTGAATCCCTTGCATGAACGCCAGCTG  >  NC_002947/6060429‑6060717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.