Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_002947	4,635,455	(TATAGCGCTGGCCGGCAAAGGCCAGAC)1→2	coding (347/639 nt)	uvrY ←	BarA/UvrY two‑componenent system response regulator

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4635429 =	7 (0.260)	36 (1.360)	30/274	0.1	88.9%	coding (373/639 nt)	uvrY	BarA/UvrY two‑componenent system response regulator
	?	NC_002947	= 4635455	2 (0.080)					coding (347/639 nt)	uvrY	BarA/UvrY two‑componenent system response regulator

ATCAAGGTAGTGGCGGTGACGGTGTGCGAGGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4635576‑4635429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCTGATGATCGTCGGCTGCCAGA  <  NC_002947/4635455‑4635312                                                                                                                                                                                                                                                                                                      ATCAAGGTAGTGGCGGTGACGGTGTGCGAGGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGT                                                                                                                                                >  2:498033/1‑150    AAGGTAGTGGCGGTGACGGTGTGCGAGGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTG                                                                                                                                             >  1:89284/1‑150               GGTGACGGTGTGCGAGGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGG                                                                                                                                  >  1:261859/1‑150                              GGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCATCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAG                                                                                                                   >  1:5647/1‑150                                   ACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGC                                                                                                              >  1:48825/1‑150                                     aCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAG                                                                                                            >  2:546562/2‑150                                     CCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAG                                                                                                            >  2:468184/1‑150                                           CCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCC                                                                                                      >  1:629809/1‑150                                                  GCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGT                                                                                               >  1:255681/1‑150                                                     TGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGG                                                                                            <  2:255681/150‑1                                                        TGCAGGCCGGCGCTGCCGGCTACCTGACCAAGTGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGC                                                                                         <  1:390925/150‑1                                                             GCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAA                                                                                    >  1:507159/1‑150                                                                     TGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCA                                                                            <  2:48825/150‑1                                                                        CGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCC                                                                         >  1:468555/1‑150                                                                           CTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCA                                                                      >  1:120831/1‑150                                                                             ACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGG                                                                    <  2:120831/150‑1                                                                                   CCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGGCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTC                                                              <  2:5647/150‑1                                                                                        GGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTC                                                         <  2:408029/150‑1                                                                                        GGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTC                                                         <  2:455799/150‑1                                                                                                   TGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTC                                              <  2:261859/150‑1                                                                                                     ACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCG                                            >  1:641131/1‑150                                                                                                            GGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGA                                     <  2:490744/150‑1                                                                                                                 AGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGG                                                                   <  2:603271/115‑1                                                                                                                 AGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGG                                                                   >  1:603271/1‑115                                                                                                                   GCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTACAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATattt                              <  2:507159/150‑5                                                                                                                     CATTCGTCTGGCCTTTCTCGGCCCGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGAT                            <  2:468555/150‑1                                                                                                                       TTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCA                                                                            >  1:546749/1‑100                                                                                                                       TTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCA                                                                            <  2:546749/100‑1                                                                                                                         CGTCTGGCCTTTGCCGGCCAGCGCTATAGCCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGgc                        <  1:498033/150‑3                                                                                                                             TGGCCTTTGCCGGCCATCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCTGA                    <  2:89284/150‑1                                                                                                                              GGCCTTTGCCGGCCACCGATATAGTCGGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCTGAT                   <  2:629809/150‑1                                                                                                                               GCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTC                                              >  2:16164/1‑122                                                                                                                               GCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTC                                              <  1:16164/122‑1                                                                                                                                CCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCTGATGA                 >  2:604570/1‑150                                                                                                                                     GCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCTGATGATCGTC            <  1:468184/150‑1                                                                                                                                               GCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGTAAATCCAGATTGCCCTGATGATCGTCGGCTGCCAGA  <  1:604570/150‑1                                                                                                                                                                                                                                                                                                      ATCAAGGTAGTGGCGGTGACGGTGTGCGAGGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4635576‑4635429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCTGATGATCGTCGGCTGCCAGA  <  NC_002947/4635455‑4635312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.